Drug Extraction Code

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>com.micronlp</groupId>
	<artifactId>drug_extraction</artifactId>
	<packaging>jar</packaging>
	<version>1.0</version>
	<name>drug-extraction</name>
	<url>http://example.org</url>


	<properties>
		<project.source.charset>UTF-8</project.source.charset>
		<project.source.encoding>UTF-8</project.source.encoding>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<gate.version>7.1</gate.version>
		<gate.asm.version>3.1</gate.asm.version>
		<gate.compiler.version>3.7.1</gate.compiler.version>
	</properties>

	<build>
		<finalName>drug-extraction</finalName>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<configuration>
					<source>1.6</source>
					<target>1.6</target>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.mortbay.jetty</groupId>
				<artifactId>maven-jetty-plugin</artifactId>
				<version>6.1.24</version>
				<configuration>
					<contextPath>/micronlp-experiments</contextPath>
				</configuration>
			</plugin>

			<!--Mallet logging is horrifically verbose, and has not easy to configure -->
			<!--We have to use this complicated process to copy the logging.properties 
				file to the right location -->
			<plugin>
				<artifactId>maven-resources-plugin</artifactId>
				<version>2.6</version>
				<executions>
					<execution>
						<id>copy-resources</id>
						<phase>validate</phase>
						<goals>
							<goal>copy-resources</goal>
						</goals>
						<configuration>
							<outputDirectory>
								${basedir}/target/classes/cc/mallet/util/resources
							</outputDirectory>
							<resources>
								<resource>
									<directory>src/main/resources</directory>
									<filtering>true</filtering>
								</resource>
							</resources>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-assembly-plugin</artifactId>
				<version>2.4</version>
				<executions>
					<execution>

						<goals>
							<goal>attached</goal>
						</goals>

						<phase>package</phase>

						<configuration>
							<descriptorRefs>
								<descriptorRef>jar-with-dependencies</descriptorRef>
							</descriptorRefs>
							<descriptors>
								<descriptor>src/main/assembly/project.xml</descriptor>
							</descriptors>
							<archive>
								<!-- <manifest> <mainClass>com.micronlp.drug_extraction.DrugTagger</mainClass> 
									</manifest> -->
							</archive>
						</configuration>

					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>




	<repositories>


		<repository>
			<id>mvnrepository.com</id>
			<name>mvnrepository.com</name>
			<url>http://mvnrepository.com</url>
		</repository>

		<repository>
			<id>repo2.maven.org</id>
			<name>repo2.maven.org</name>
			<url>http://repo2.maven.org/maven2</url>
		</repository>

		<repository>
			<id>download.java.net</id>
			<name>download.java.net</name>
			<url>http://download.java.net/maven/2</url>
		</repository>


	</repositories>

	<dependencies>


		<!-- Logging -->
		<dependency>
			<groupId>log4j</groupId>
			<artifactId>log4j</artifactId>
			<version>1.2.14</version>
		</dependency>



		<!-- GATE -->
		<dependency>
			<groupId>uk.ac.gate</groupId>
			<artifactId>gate-core</artifactId>
			<version>${gate.version}</version>
		</dependency>
		<dependency>
			<groupId>uk.ac.gate</groupId>
			<artifactId>gate-asm</artifactId>
			<version>${gate.asm.version}</version>
		</dependency>
		<dependency>
			<groupId>uk.ac.gate</groupId>
			<artifactId>gate-compiler-jdt</artifactId>
			<version>${gate.compiler.version}</version>
		</dependency>


		<!-- Mallet -->
		<dependency>
			<groupId>cc.mallet</groupId>
			<artifactId>mallet</artifactId>
			<version>2.0.7</version>
		</dependency>

		<!-- Lucene -->
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>slf4j-log4j12 </artifactId>
			<version>1.5.6</version>
		</dependency>

		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-core</artifactId>
			<version>3.0.3</version>
		</dependency>

		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-analyzers</artifactId>
			<version>3.0.3</version>
		</dependency>
	
	
		<!-- OpenCSV -->
		<dependency>
			<groupId>net.sf.opencsv</groupId>
			<artifactId>opencsv</artifactId>
			<version>2.3</version>
		</dependency>

	</dependencies>



</project>