diCal2 Code

ODE Core does not work properly with admixutre pulses yet.

Added some failsafe checks so that it is never used

Should now be able to read haploid vcf files as well.

before starting to implement haploid vcf reading

finished deleting old sequence format

removed old sequence format from examples

just some restructuring

The default behaviour is now to not accept unphased genotypes. If they should be accepted, you have to explicitly specify a flag.

if a vcf file is read, we now explicitly print out how many segregating sites have at least one missing allele. and warn about them being ignored in the analysis

fixed a bug where no new meta points where chossen, if the previous best one didn't have variation between them

vcfDiAllelic and TriAllelic removed, because they don't do anything anyways