coalescent Code

1.2.2 Add feature in coalescent_app to check phylogeny ID: 1760119441 Started: 12/8/10 Closed:  Status: OPEN


1.2.2 Implement exact recursion listeners via decorators ID: 632712532 Started:  Closed:  Status: OPEN


 Study performance of exact implementation of probability recursions for KC64 and k69 ID: 1183092872 Started:  Closed:  Status: OPEN

      Requires parameter estimators and a data simulator. The input varies among models. For K69, input are the sample size n and the total number of segregating sites s. The output would be # of ACs, # of genealogies and the computation time. For KC64, the sample size n is the only input and the output are the same. 



 Run junit tests as part of all releases ID: 1391167783 Started: 12/1/10 Closed:  Status: OPEN


 Revise the project website ID:1299735984 Started: Closed: Status: OPEN


 Check GTSampler manually using the exact probability for a small dataset ID:1519652386 Started: Closed: Status: OPEN


 GusfieldAlgorithm implementation has a bug. Though it passes the small unit tests, it wrongly reports the gt94 data to not have a phylogeny.