coalescent Code

Software tool for Research in Computational Population Genetics

Brought to you by: freecode4susant

Commit [r111] Maximize Restore History

1. better input description

2. recursion now traverses the distinct ACs only once
3. Global formatting in results of BigInteger, BigDecimal and double
4. Outputs correct result for counting distinct ACs on the small data sets of Yong 2005
5. More tidbits

Authored by: freecode4susant 2010-12-07

Browse code at this revision

Parent: [r110]

Child: [r112]

changed	/coalescent_ws/coalescent/src/coalescent/recursion/AncestralConfigBuilder.java
changed	/coalescent_ws/coalescent/src/coalescent/recursion/AncestralConfigCounter.java
changed	/coalescent_ws/coalescent/src/coalescent/recursion/ExactProbComputer.java
changed	/coalescent_ws/coalescent/src/coalescent/recursion/ExactRecursion.java
changed	/coalescent_ws/coalescent/src/coalescent/recursion/GenealogyBuilder.java
changed	/coalescent_ws/coalescent/src/coalescent/recursion/GenealogyCounter.java
changed	/coalescent_ws/coalescent/src/popgen/model/K69.java
changed	/coalescent_ws/coalescent/src/popgen/model/KC64.java
changed	/coalescent_ws/coalescent/test/coalescent/recursion/AncestralConfigBuilderTest.java
added	/coalescent_ws/coalescent/test/coalescent/recursion/AncestralConfigCounterTest.java
changed	/coalescent_ws/coalescent_app/console.properties
changed	/coalescent_ws/coalescent_app/src/app/Command.java
changed	/coalescent_ws/coalescent_app/src/console/command/ConsoleCommand.java
changed	/coalescent_ws/coalescent_app/src/console/command/ExactRecursionBasedCompCommand.java
changed	/coalescent_ws/coalescent_app/src/console/event/ExactRecursionBasedCompEvent.java
changed	/coalescent_ws/coalescent_app/src/console/event/ModelStatisticBasedEvent.java
changed	/coalescent_ws/coalescent_lib/src/util/FormatUtil.java

/coalescent_ws/coalescent/src/coalescent/recursion/AncestralConfigBuilder.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/coalescent/recursion/AncestralConfigCounter.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/coalescent/recursion/ExactProbComputer.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/coalescent/recursion/ExactRecursion.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/coalescent/recursion/GenealogyBuilder.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/coalescent/recursion/GenealogyCounter.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/popgen/model/K69.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/src/popgen/model/KC64.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/test/coalescent/recursion/AncestralConfigBuilderTest.java Diff Switch to side-by-side view

/coalescent_ws/coalescent/test/coalescent/recursion/AncestralConfigCounterTest.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/console.properties Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/src/app/Command.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/src/console/command/ConsoleCommand.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/src/console/command/ExactRecursionBasedCompCommand.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/src/console/event/ExactRecursionBasedCompEvent.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_app/src/console/event/ModelStatisticBasedEvent.java Diff Switch to side-by-side view

/coalescent_ws/coalescent_lib/src/util/FormatUtil.java Diff Switch to side-by-side view