Bowtie Discussion

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Topic	Posts	Views	Last Post
ERROR MESSAGE: Input files reads and reference have incompatible cont... By Takashi Koyama on Wed Jan 27, 2016 12:20 PM	1	1733	By Takashi Koyama on Wed Jan 27, 2016 12:20 PM
false positive SNPs due to mis-alignment of reads onto paralogs By Lev Yampolsky on Wed Nov 11, 2015 07:30 PM	1	311	By Lev Yampolsky on Wed Nov 11, 2015 07:30 PM
question about aligning to custom genome By Steve on Mon Aug 03, 2015 02:18 PM	1	317	By Steve on Mon Aug 03, 2015 02:18 PM
Bowtie2-2.2.5 creating an empty SAM file By Sheila on Wed Apr 01, 2015 06:07 PM	1	531	By Sheila on Wed Apr 01, 2015 06:07 PM
Bowtie idling on large index run >15GB - is this a memory issue? By opnri on Mon Jan 05, 2015 07:33 PM	1	282	By opnri on Mon Jan 05, 2015 07:33 PM
Bowtie-1.1.1 gets stuck when encountering certain reads, may be a new... By hdinhdp on Thu Dec 04, 2014 12:12 AM	2	361	By hdinhdp on Thu Dec 04, 2014 01:13 AM
NO IH tag By fengfei on Sun Nov 17, 2013 03:17 AM	1	203	By fengfei on Sun Nov 17, 2013 03:17 AM
Welcome By Ben Langmead on Wed Jan 07, 2009 04:50 PM	2	320	By Nobody/Anonymous on Wed May 15, 2013 01:45 PM
doesorder of fasta file for indexing matters? By Matt Settles on Thu Apr 16, 2009 06:18 PM	3	380	By Nobody/Anonymous on Wed May 15, 2013 01:45 PM
Gene model (GFF3) for tophat By Nobody/Anonymous on Tue Mar 16, 2010 11:39 AM	2	654	By Nobody/Anonymous on Wed May 15, 2013 01:44 PM
TopHat 1.0.13 (BETA) By Nobody/Anonymous on Fri Jun 18, 2010 03:32 AM	2	361	By Nobody/Anonymous on Wed May 15, 2013 01:44 PM
Genomics palindromes By Leonor on Wed Jul 25, 2012 08:50 AM	2	244	By Nobody/Anonymous on Wed May 15, 2013 01:44 PM
Diffrent Alignment Sequence By Nobody/Anonymous on Mon Jan 16, 2012 08:09 PM	1	163	By Nobody/Anonymous on Mon Jan 16, 2012 08:09 PM
Bowtie:2paired reads mapped to differ contig? By Nobody/Anonymous on Mon Jun 06, 2011 02:22 AM	1	258	By Nobody/Anonymous on Mon Jun 06, 2011 02:22 AM
Mapping Reads with GU Wobble Pairing By Tony S on Fri Nov 15, 2013 07:40 PM	1	187	By Tony S on Fri Nov 15, 2013 07:40 PM