Crossbow expects 'bowtie' to be at path /usr/local/crossbow-1.2.0/bin/linux64/bowtie on the workers
Crossbow expects 'soapsnp' to be at path /usr/local/crossbow-1.2.0/bin/linux64/soapsnp on the workers
Crossbow expects 'fastq-dump' to be at path /usr/local/bin/fastq-dump on the workers
Could not parse Hadoop version: "0.20.2-cdh3u5"
Is there any way around this issue?
Thank you in advance
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I am also trying to run the examples in a small hadoop cluster running Cloudera's 0.20.2-cdh3u5 version. And when i run the command:
$ $CROSSBOW_HOME/cb_hadoop -preprocess -input=hdfs:///hadoop_tmp_dir/crossbow/example/mouse17/full.manifest -output=hdfs:///hadoop_tmp_dir/crossbow/example/mouse17/output_full -reference=hdfs:///hadoop_tmp_dir/crossbow-refs/mm9_chr17.jar
I receive the following:
Crossbow expects 'bowtie' to be at path /usr/local/crossbow-1.2.0/bin/linux64/bowtie on the workers
Crossbow expects 'soapsnp' to be at path /usr/local/crossbow-1.2.0/bin/linux64/soapsnp on the workers
Crossbow expects 'fastq-dump' to be at path /usr/local/bin/fastq-dump on the workers
Could not parse Hadoop version: "0.20.2-cdh3u5"
Is there any way around this issue?
Thank you in advance
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