The manual mentions that Bowtie version 0.12.0 is not compatible with Crossbow. So I decided to get an older version. I need the bowtie-build tool and looks like it is not distributed in the crossbow zip file. The bowtie tool is distributed and has version 0.10.2. however the bowtie download site does not have that build. The next available is 0.11.2 and it is dated before the release of Crossbow. So I got that build and am using bowtie-build version 0.11.2. Is this the right version to get to create the ebwt files for current crossbow release?
Any advice is appreciated.
Thanks
Avi
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Hi
The manual mentions that Bowtie version 0.12.0 is not compatible with Crossbow. So I decided to get an older version. I need the bowtie-build tool and looks like it is not distributed in the crossbow zip file. The bowtie tool is distributed and has version 0.10.2. however the bowtie download site does not have that build. The next available is 0.11.2 and it is dated before the release of Crossbow. So I got that build and am using bowtie-build version 0.11.2. Is this the right version to get to create the ebwt files for current crossbow release?
Any advice is appreciated.
Thanks
Avi
Yes, that version of bowtie-build should work.
Thanks,
Ben