Bowtie Code

Brought to you by: ben_langmead, ch4rr0, ctrapnell, mcschatz

Code Commit Log

Commit	Date
[r66] by ben_langmead Don't purge JAVA_HOME from environment. This keeps mappers and reducers from being able to invoke 'hadoop' script.	2012-07-15 23:36:21	Tree
[r65] by ben_langmead New version	2012-07-15 18:41:29	Tree
[r64] by ben_langmead Tighter control over use of ENV. Environment is now purged at the top of all the map/reduce scripts, after Tools::initTools() and after copying %ENV into %env. All subsequent uses of the environment are either to set RHOME or to read other useful environment variables out of %env.	2012-07-15 18:28:39	Tree
[r63] by ben_langmead Removing compatibility with 0.18	2012-07-15 13:31:11	Tree
[r62] by ben_langmead	2012-07-15 13:19:17	Tree
[r61] by ben_langmead Removed some counters in the Normalize step so as to avoid bumping up against the mapreduce.job.counters.limit in some versions of Hadoop.	2012-07-15 13:15:37	Tree
[r60] by ben_langmead Updated reference to streaming jar to be consistent with 0.20.205 naming	2012-07-15 02:55:15	Tree
[r59] by ben_langmead Updated reference to streaming jar to be consistent with 0.20.205 naming	2012-07-15 02:53:25	Tree
[r58] by ben_langmead More modifications to fix --fastq-dump issues in Hadoop mode	2012-07-14 23:14:13	Tree
[r57] by ben_langmead Fixed small bug in --fastq-dump propagation in hadoop mode	2012-07-14 23:05:39	Tree

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