Bowtie Code

Brought to you by: ben_langmead, ch4rr0, ctrapnell, mcschatz

Code Commit Log

Commit	Date
[r33] by ben_langmead	2012-06-27 21:17:29	Tree
[r32] by ben_langmead	2012-06-27 20:45:10	Tree
[r31] by ben_langmead	2012-06-27 19:41:59	Tree
[r30] by ben_langmead Updating all the scripts to use Ensembl v67	2012-06-27 15:01:12	Tree
[r29] by ben_langmead Fix for latest C elegans	2012-06-26 19:52:20	Tree
[r28] by ben_langmead Attempt to fix issue w/r/t the new Ensembl schema, which does not distinguish GO ontologies	2012-06-26 15:22:20	Tree
[r27] by wbsl3030 Removed version number from hadoop-streaming.jar for emr jobs. Amazon wants /home/hadoop/contrib/streaming/hadoop-streaming.jar only	2012-02-07 16:23:59	Tree
[r26] by wbsl3030 display more information in job title (seen in hadoop web ui) changed --sra-toolkit to --fastq-dump flag --fasq-dump is passed to all slaves along with --bowtie and --soapsnp Removed environment variables from preprocessing step (Copy)	2012-01-31 22:16:28	Tree
[r25] by wbsl3030 1. fixed --sra-toolkit flag 2. removed counters from beginning of each stage 3. Clear environment at beginning of each stage to prevent calls to hadoop script from failing 4. Prefer unzip over jar for extracting jar files (solved jar hanging problem)	2012-01-06 16:38:38	Tree
[r24] by ben_langmead Just making extra sure that we are wiping out any spurious VERSION file that might exist in the cgi-bin dir.	2011-05-23 20:24:25	Tree

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