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Commit [r25]  Maximize  Restore  History

1. fixed --sra-toolkit flag

2. removed counters from beginning of each stage
3. Clear environment at beginning of each stage to prevent calls to hadoop script from failing
4. Prefer unzip over jar for extracting jar files (solved jar hanging problem)

wbsl3030 2012-01-06

Browse code at this revision

Parent: [r24]

Child: [r26]

changed /crossbow/Align.pl
changed /crossbow/CBFinish.pl
changed /crossbow/CrossbowIface.pm
changed /crossbow/Get.pm
changed /crossbow/Soapsnp.pl
changed /crossbow/Tools.pm
/crossbow/Align.pl Diff Switch to side-by-side view
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/crossbow/CBFinish.pl Diff Switch to side-by-side view
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/crossbow/CrossbowIface.pm Diff Switch to side-by-side view
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/crossbow/Get.pm Diff Switch to side-by-side view
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/crossbow/Soapsnp.pl Diff Switch to side-by-side view
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/crossbow/Tools.pm Diff Switch to side-by-side view
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