| 334 |
bowtie-inspect crashes |
v0.9.0 |
closed |
|
2015-04-22
|
2015-04-29
|
5 |
|
| 333 |
Error, cmd: bowtie2-build!! Abundance Estimation Using RSEM (Trinity) Paired end reads! |
v0.9.0 |
closed |
Val
|
2015-04-16
|
2015-11-04
|
5 |
|
| 332 |
paired-end bowtie with --all --try-hard doesn't report all possibilities |
v0.9.0 |
open |
|
2015-04-03
|
2015-04-03
|
2 |
|
| 331 |
bowtie 1.1.1 fails on large index |
v0.9.0 |
closed |
Val
|
2015-03-31
|
2016-10-25
|
3 |
|
| 330 |
Incorrect mapping positions/TLEN field Bowtie2 (2.2.4) |
v0.9.0 |
open |
|
2015-02-25
|
2015-02-25
|
5 |
|
| 329 |
Add library type fr-firststrand to bowtie2 |
v0.9.0 |
closed |
Val
|
2015-02-11
|
2015-06-23
|
1 |
|
| 328 |
Incorrect TLEN sign for reverse complement paired reads? |
v0.9.0 |
open |
|
2015-02-11
|
2015-02-17
|
5 |
|
| 327 |
bowtie2-align died with signal 6 (ABRT) |
v0.9.0 |
closed |
|
2015-01-09
|
2015-02-17
|
5 |
|
| 326 |
Bowtie 1.1.1 hangs when run on indexes built on databases >15GB |
v0.9.0 |
open |
|
2015-01-06
|
2015-02-17
|
5 |
|
| 325 |
bowtie2 Perl wrapper does not quote argument values |
v0.9.0 |
closed |
Val
|
2014-12-09
|
2015-02-17
|
5 |
|
| 324 |
Typos in doc |
v0.9.0 |
closed |
Val
|
2014-12-05
|
2015-02-17
|
5 |
|
| 323 |
Mapping rate anomaly for fragments slightly greater than maxins |
v0.9.0 |
open |
|
2014-11-21
|
2014-11-24
|
5 |
|
| 322 |
Trimming more than read length causes a crash (bowtie 1.1.1, paired-end) |
v0.9.0 |
closed |
Val
|
2014-11-09
|
2015-06-04
|
5 |
|
| 321 |
bowtie2 --no-unal option removed from help/usage statement |
v0.9.0 |
closed |
Val
|
2014-09-29
|
2014-09-29
|
5 |
|
| 320 |
unexpected bowtie2 unpaired alignment behavior |
v0.9.0 |
open |
|
2014-08-19
|
2014-08-19
|
5 |
|
| 319 |
Bowtie2 -a option MAPQ scores not 0 or 255; also, question about split references |
v0.9.0 |
open |
|
2014-08-07
|
2014-08-07
|
5 |
|
| 318 |
-u/--qupto arg must be at least 1 |
v0.9.0 |
open |
|
2014-07-30
|
2014-07-31
|
5 |
|
| 317 |
invalid reads in unmapped fastq (missing @ symbol) |
v0.9.0 |
open |
|
2014-07-22
|
2015-02-24
|
5 |
|
| 316 |
(ERR): Expected bowtie2 to be in same directory with bowtie2-align |
v0.9.0 |
closed |
Val
|
2014-06-12
|
2014-10-01
|
5 |
|
| 315 |
error in bowtie2 |
v0.9.0 |
closed |
|
2014-06-10
|
2015-02-11
|
5 |
|
| 314 |
bowtie2-inspect crash |
v0.9.0 |
closed |
|
2014-05-19
|
2014-06-11
|
5 |
|
| 313 |
BOWTIE2 => (ERR): Could not open --un-conc mate-1 output file ... at line 402 |
v0.9.0 |
closed |
|
2014-05-19
|
2014-06-11
|
5 |
|
| 312 |
bowtie 1.0.1 on mac os x 10.9.2 could not be compiled |
v0.9.0 |
closed |
Val
|
2014-05-16
|
2014-07-23
|
5 |
|
| 311 |
Results on reverse complement reads |
v0.9.0 |
closed |
|
2014-05-14
|
2014-06-18
|
7 |
|
| 310 |
Incorrect fastq format of --un output |
v0.9.0 |
closed |
Val
|
2014-05-12
|
2014-12-01
|
5 |
|