BANNER Named Entity Recognition System Code

Brought to you by: bleaman

Commit [r21] Maximize Restore History

Added code and model for NCBI Disease corpus

Authored by: bleaman 2013-12-15

Browse code at this revision

Parent: [r20]

Child: [r22]

added	/trunk/config/banner_NCBIDisease_DEV.xml
added	/trunk/config/banner_NCBIDisease_TRAIN.xml
added	/trunk/config/banner_NCBIDisease_UMLS_DEV.xml
added	/trunk/config/banner_NCBIDisease_UMLS_TRAIN.xml
added	/trunk/lib/trove-3.0.3.jar
added	/trunk/output/model_NCBIDisease_O1.bin
added	/trunk/output/model_NCBIDisease_O1_UMLS2013AA.bin
added	/trunk/src/banner/eval/dataset/PubtatorDataset.java
changed	/trunk/src/banner/tagging/dictionary/DictionaryTagger.java
added	/trunk/src/banner/tagging/dictionary/UMLSMetathesaurusDictionaryTagger_2013AA.java
changed	/trunk/src/banner/types/Mention.java
changed	/trunk/src/banner/types/Sentence.java
added	/trunk/src/banner/util/SentenceBreaker.java

/trunk/config/banner_NCBIDisease_DEV.xml Diff Switch to side-by-side view

/trunk/config/banner_NCBIDisease_TRAIN.xml Diff Switch to side-by-side view

/trunk/config/banner_NCBIDisease_UMLS_DEV.xml Diff Switch to side-by-side view

/trunk/config/banner_NCBIDisease_UMLS_TRAIN.xml Diff Switch to side-by-side view

/trunk/lib/trove-3.0.3.jar

Binary file was added.

/trunk/output/model_NCBIDisease_O1.bin

Binary file was added.

/trunk/output/model_NCBIDisease_O1_UMLS2013AA.bin

Binary file was added.

/trunk/src/banner/eval/dataset/PubtatorDataset.java Diff Switch to side-by-side view

/trunk/src/banner/tagging/dictionary/DictionaryTagger.java Diff Switch to side-by-side view

/trunk/src/banner/tagging/dictionary/UMLSMetathesaurusDictionaryTagger_2013AA.java Diff Switch to side-by-side view

/trunk/src/banner/types/Mention.java Diff Switch to side-by-side view

/trunk/src/banner/types/Sentence.java Diff Switch to side-by-side view

/trunk/src/banner/util/SentenceBreaker.java Diff Switch to side-by-side view