<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>ambit</groupId>
<artifactId>ambit2-all</artifactId>
<packaging>pom</packaging>
<version>4.1.0-SNAPSHOT</version>
<name>Ambit 2</name>
<description>AMBIT offers chemoinformatics functionality via REST web services and desktop applications. Chemical compounds and data storage in MySQL database; substructure, similarity and other queries, descriptor calculation and predictive models building.</description>
<url>http://ambit.sourceforge.net</url>
<repositories>
<repository>
<snapshots>
<enabled>false</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
<id>central</id>
<name>Maven Repository Switchboard</name>
<url>https://repo1.maven.org/maven2</url>
</repository>
<repository>
<id>nexus-idea</id>
<url>https://nexus.ideaconsult.net/content/repositories/thirdparty</url>
<snapshots>
<enabled>false</enabled>
<updatePolicy>always</updatePolicy>
</snapshots>
</repository>
<repository>
<id>nexus-idea-releases</id>
<url>https://nexus.ideaconsult.net/content/repositories/releases</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
</repository>
<repository>
<id>nexus-idea-snapshots</id>
<url>https://nexus.ideaconsult.net/content/repositories/snapshots</url>
<snapshots>
<enabled>true</enabled>
<updatePolicy>always</updatePolicy>
</snapshots>
</repository>
<repository>
<id>mvnrepository</id>
<name>mvnrepository</name>
<url>https://mvnrepository.com/</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>maven-restlet</id>
<name>Public online Restlet repository</name>
<url>https://maven.restlet.com</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
<ciManagement>
<system>Jenkins</system>
<url>https://jenkins.ideaconsult.net/</url>
</ciManagement>
<inceptionYear>2004</inceptionYear>
<issueManagement>
<url>https://sourceforge.net/p/ambit/bugs/</url>
</issueManagement>
<developers>
<developer>
<id>vedina</id>
<name>Nina Jeliazkova</name>
<email>jeliazkova.nina@gmail.com</email>
<url>http://vedina.users.sf.net</url>
<roles>
<role>System Architecture</role>
<role>Java Developer</role>
<role>Cheminformatics algorithms</role>
<role>Database developer</role>
</roles>
</developer>
<developer>
<id>ntk73</id>
<name>Nikolay Kochev</name>
<roles>
<role>Cheminformatics algorithms</role>
<role>Java Developer</role>
</roles>
</developer>
<developer>
<id>JJ</id>
<name>Joanna Jaworska</name>
<roles>
<role>Specification</role>
</roles>
</developer>
<developer>
<id>martin.martinov</id>
<name>Martin Martinov</name>
<roles>
<role>Java Developer</role>
</roles>
</developer>
<developer>
<id>vj</id>
<name>Vedrin Jeliazkov</name>
<email>vedrin.jeliazkov@gmail.com</email>
<roles>
<role>Quality assurance</role>
<role>Installer development</role>
</roles>
</developer>
</developers>
<scm>
<connection>scm:git:git://git.code.sf.net/p/ambit/git</connection>
<developerConnection>scm:git:ssh://USER@git.code.sf.net/p/ambit/git </developerConnection>
<tag>HEAD</tag>
<url>https://sourceforge.net/p/ambit/git/ci/master/tree/ambit2-all/</url>
</scm>
<organization>
<name>Ideaconsult Ltd.</name>
<url>http://www.ideaconsult.net</url>
</organization>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
</resource>
</resources>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>${sourceVersion}</source>
<target>${sourceVersion}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.22.1</version>
<configuration>
<skip>true</skip>
<disableXmlReport>true</disableXmlReport>
<argLine>-Xmx1024m</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.4.3</version>
<configuration>
<nonFilteredFileExtensions>
<nonFilteredFileExtension>exe</nonFilteredFileExtension>
<nonFilteredFileExtension>dll</nonFilteredFileExtension>
<nonFilteredFileExtension>obf</nonFilteredFileExtension>
<nonFilteredFileExtension>prm</nonFilteredFileExtension>
</nonFilteredFileExtensions>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.5</version>
<configuration>
<archive>
<manifest>
<!-- <mainClass>${mainclass}</mainClass> <packageName>${project.artifactId}</packageName> -->
<addClasspath>true</addClasspath>
<!-- <addExtensions /> <classpathPrefix /> -->
</manifest>
<manifestEntries>
<mode>development</mode>
<url>${project.url}</url>
</manifestEntries>
<manifestFile>target/classes/META-INF/MANIFEST.MF</manifestFile>
</archive>
</configuration>
<executions>
<execution>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>1.3</version>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>create</goal>
</goals>
</execution>
</executions>
<configuration>
<revisionOnScmFailure>-${maven.build.timestamp}</revisionOnScmFailure>
<doCheck>false</doCheck>
<doUpdate>false</doUpdate>
<getRevisionOnlyOnce>true</getRevisionOnlyOnce>
<locale>US</locale>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.4</version>
<executions>
<execution>
<id>attach-sources</id>
<phase>verify</phase>
<goals>
<goal>jar</goal>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.1</version>
<configuration>
<releaseProfiles>release</releaseProfiles>
<remoteTagging>true</remoteTagging>
<autoVersionSubmodules>true</autoVersionSubmodules>
<!-- <preparationGoals>clean install</preparationGoals> -->
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>3.3</version>
<configuration>
<locales>en</locales>
</configuration>
<dependencies>
<dependency>
<groupId>lt.velykis.maven.skins</groupId>
<artifactId>reflow-velocity-tools</artifactId>
<version>1.1.1</version>
</dependency>
</dependencies>
</plugin>
<!-- generates PDF from the site -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-pdf-plugin</artifactId>
<version>1.2</version>
<executions>
<execution>
<id>pdf</id>
<phase>site</phase>
<goals>
<goal>pdf</goal>
</goals>
<configuration>
<outputDirectory>${project.reporting.outputDirectory}</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
</build>
<modules>
<module>ambit2-balloon</module>
<module>ambit2-base</module>
<!--
<module>ambit2-chebi</module>
-->
<module>ambit2-core</module>
<module>ambit2-db</module>
<module>ambit2-dbext</module>
<module>ambit2-dbui</module>
<module>ambit2-descriptors</module>
<module>ambit2-dragon</module>
<module>ambit2-export</module>
<module>ambit2-groupcontribution</module>
<module>ambit2-jchempaint</module>
<module>ambit2-markush</module>
<module>ambit2-model</module>
<module>ambit2-mopac</module>
<module>ambit2-namestructure</module>
<!-- <module>ambit2-nano</module> -->
<module>ambit2-pubchem</module>
<module>ambit2-reactions</module>
<module>ambit2-rendering</module>
<module>ambit2-rest</module>
<module>ambit2-sln</module>
<module>ambit2-smarts</module>
<module>ambit2-smi23d</module>
<module>ambit2-some</module>
<module>ambit2-structure2name</module>
<module>ambit2-tautomers</module>
<module>ambit2-ui</module>
<!-- <module>ambit2-waffles</module> -->
<module>ambit2-rules</module>
<module>ambit2-poi</module>
<module>ambit2-fp</module>
<module>ambit2-ml</module>
<module>ambit2-notation</module>
</modules>
<distributionManagement>
<!-- <repository> <id>dev_web_sourceforge</id> <url>scp://web.sourceforge.net/home/groups/a/am/ambit/htdocs/jars</url>
</repository> -->
<snapshotRepository>
<id>nexus-idea-snapshots</id>
<url>https://nexus.ideaconsult.net/content/repositories/snapshots</url>
</snapshotRepository>
<repository>
<id>nexus-idea-releases</id>
<url>https://nexus.ideaconsult.net//content/repositories/releases</url>
</repository>
<site>
<id>website_ambit</id>
<url>scp://shell.sourceforge.net/home/project-web/ambit/htdocs/AMBIT2-LIBS</url>
</site>
</distributionManagement>
<mailingLists>
<mailingList>
<name>Developers list</name>
<subscribe>https://lists.sourceforge.net/lists/listinfo/ambit-developers</subscribe>
<unsubscribe>https://lists.sourceforge.net/lists/listinfo/ambit-developers</unsubscribe>
<post>mailto:ambit-developers@lists.sourceforge.net</post>
<archive>http://sourceforge.net/mailarchive/forum.php?forum_name=ambit-developers</archive>
</mailingList>
<mailingList>
<name>Users list</name>
<subscribe>https://lists.sourceforge.net/lists/listinfo/ambit-users</subscribe>
<unsubscribe>https://lists.sourceforge.net/lists/listinfo/ambit-users</unsubscribe>
<post>mailto:ambit-users@lists.sourceforge.net</post>
<archive>http://sourceforge.net/mailarchive/forum.php?forum_name=ambit-users</archive>
</mailingList>
<mailingList>
<name>QMRF users list</name>
<subscribe>https://lists.sourceforge.net/lists/listinfo/ambit-qmrf</subscribe>
<unsubscribe>https://lists.sourceforge.net/lists/listinfo/ambit-qmrf</unsubscribe>
<post>mailto:ambit-qmrf@lists.sourceforge.net</post>
<archive>http://sourceforge.net/mailarchive/forum.php?forum_name=ambit-qmrf</archive>
</mailingList>
</mailingLists>
<licenses>
<license>
<name>LGPL</name>
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
<distribution>repo</distribution>
<comments>LGPL 2</comments>
</license>
</licenses>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>2.7</version>
<reportSets>
<reportSet>
<reports>
<report>license</report>
<report>issue-tracking</report>
<report>mailing-list</report>
<report>project-team</report>
<report>scm</report>
<report>dependencies</report>
</reports>
</reportSet>
</reportSets>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>jdepend-maven-plugin</artifactId>
<version>2.0-beta-2</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
<version>2.16</version>
<configuration>
<showSuccess>false</showSuccess>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.1.1</version>
<configuration>
<doclet>org.umlgraph.doclet.UmlGraphDoc</doclet>
<!-- https://issues.apache.org/jira/browse/MJAVADOC-453?page=com.atlassian.jira.plugin.system.issuetabpanels%3Aall-tabpanel -->
<docletArtifact>
<groupId>org.umlgraph</groupId>
<artifactId>umlgraph</artifactId>
<version>5.6.6</version>
</docletArtifact>
<additionalparam>-all</additionalparam>
<additionalOptions>
<!-- <additionalOption>-views</additionalOption> -->
<additionalOption>-attributes</additionalOption>
<additionalOption>-types</additionalOption>
<!-- <additionalparam>-inferrel</additionalparam> <additionalparam>-inferdep</additionalparam> -->
<additionalparam>-inferdepinpackage</additionalparam>
</additionalOptions>
<useStandardDocletOptions>true</useStandardDocletOptions>
</configuration>
</plugin>
</plugins>
</reporting>
<profiles>
<profile>
<id>development</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<debug>true</debug>
<optimize>false</optimize>
<source>${sourceVersion}</source>
<target>${sourceVersion}</target>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>production</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<debug>false</debug>
<optimize>true</optimize>
<source>${sourceVersion}</source>
<target>${sourceVersion}</target>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>java-9-plus</id>
<activation>
<jdk>[9,]</jdk>
</activation>
<dependencies>
<dependency>
<groupId>javax.annotation</groupId>
<artifactId>javax.annotation-api</artifactId>
<version>1.2</version>
</dependency>
</dependencies>
</profile>
<profile>
<id>runs-as-github-action</id>
<activation>
<property>
<name>env.GITHUB_ACTIONS</name>
<value>true</value>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>3.2.0</version>
<executions>
<execution>
<id>regex-property</id>
<goals>
<goal>regex-property</goal>
</goals>
<configuration>
<name>maven.test.skip</name>
<value>${project.artifactId}</value>
<regex>^$</regex>
<replacement>true</replacement>
<failIfNoMatch>false</failIfNoMatch>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<!--
<profile>
<id>JRE8</id>
<activation>
<jdk>[1.8,)</jdk>
</activation>
<properties>
<sourceVersion>1.8</sourceVersion>
</properties>
</profile>
<profile>
<id>JRE9</id>
<activation>
<jdk>[1.9,)</jdk>
</activation>
<properties>
<sourceVersion>1.9</sourceVersion>
</properties>
</profile>
-->
<profile>
<!-- http://stackoverflow.com/questions/15886209/maven-is-not-working-in-java-8-when-javadoc-tags-are-incomplete -->
<id>disable-java8-doclint</id>
<activation>
<jdk>[1.8,)</jdk>
</activation>
</profile>
</profiles>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<junit.version>[4.13.1,)</junit.version>
<!-- cdk 1.3.6 is cdk 1.3.6 with jniinchi 0.7 (support for standard InChI),
instead of jniinchi 0.5 package -->
<!-- cdk 1.3.8 is regular version, deployed to ambit repository -->
<!-- cdk 1.4.5 is regular version, deployed to ambit repository; used since
ambit 2.4.4-SNAPSHOT -->
<!-- cdk 1.4.8 is regular version, deployed to ambit repository; used since
ambit 2.4.5-SNAPSHOT -->
<!-- cdk 1.4.9 is regular version, deployed to ambit repository; used since
ambit 2.4.6-SNAPSHOT -->
<!-- cdk 1.4.10 is regular version, deployed to ambit repository; used
since ambit 2.4.7-SNAPSHOT -->
<!-- cdk 1.4.11 is regular version, deployed to ambit repository; used
since ambit 2.4.7-SNAPSHOT -->
<!-- cdk 1.5.10 @ maven central since ambit 3.0.0 -->
<!-- cdk 1.5.11 @ maven central since ambit 3.0.0 Sep 2015 -->
<!-- ambit 3.x versions <cdk.version>1.5.13</cdk.version> -->
<cdk.version>2.1.1</cdk.version>
<restnet.version>1.1.5-SNAPSHOT</restnet.version>
<modbcum.version>1.0.10-SNAPSHOT</modbcum.version>
<dbunit.version>2.6.0</dbunit.version>
<slf4j.version>1.7.12</slf4j.version>
<jackson.version>2.4.2</jackson.version>
<javadoc.plugin.version>3.1.1</javadoc.plugin.version>
<additionalparam>-Xdoclint:none</additionalparam>
<doclint>none</doclint>
<sourceVersion>1.8</sourceVersion>
<maven.compiler.source>${sourceVersion}</maven.compiler.source>
<maven.compiler.target>${sourceVersion}</maven.compiler.target>
</properties>
</project>