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Makefile.am
|
2011-08-01
|
Michael Schatz
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[fad559]
update
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amosvalidate.acf
|
2011-07-24
|
Florent Angly
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[3cf97a]
Added option to not use the clear range in the ...
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analyze-read-depth.cc
|
2010-06-07
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floflooo <>
|
[cd89fd]
Documentation update
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asmQC.cc
|
2011-07-25
|
Michael Schatz
|
[756a48]
Merge branch 'master' of ssh://amos.git.sourcef...
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asmQC.pl
|
2005-01-28
|
mpop <>
|
[bc8d58]
Fixed bug in reporting unmated reads.
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asmQC2.cc
|
2005-06-01
|
mpop <>
|
[4cba08]
explicitly cast the argument of sqrt - OSX comp...
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astats.cc
|
2008-07-07
|
mcschatz <>
|
[6510ff]
Fix int to float bug from Thomas Jahns
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|
cavalidate.acf
|
2007-01-18
|
mcschatz <>
|
[41af21]
Updates for suspiciousfeat2region to work off I...
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|
cestat-cov.cc
|
2012-02-15
|
Michael Schatz
|
[49383b]
recompute men, stdev if so desired
|
|
checkChimeras.pl
|
2004-12-17
|
mpop <>
|
[d4939d]
Added checkChimeras.pl to validation pipeline
|
|
clusterSnps.pl
|
2005-10-24
|
mschatz <>
|
[42d562]
Report distnace correctly in 2 snp case
|
|
coords2cam.pl
|
2004-04-28
|
aphillip <>
|
[e10599]
organizational overhaul
|
|
find-duplicate-reads.cc
|
2006-02-02
|
mcschatz <>
|
[9b6fba]
Helptext
|
|
find-query-breaks.pl
|
2011-11-22
|
Sergey Koren
|
[da7021]
Merge branch 'master' of ssh://amos.git.sourcef...
|
|
findTcovSnp.pl
|
2005-05-23
|
mschatz <>
|
[a85cab]
Add tests for min coverage & cqv, add qv stats
|
|
fixlib.pl
|
2004-08-11
|
aphillip <>
|
[b5b43f]
migration
|
|
getFRCvalues.cc
|
2011-05-23
|
floflooo <>
|
[83d526]
Fix for the FRCurve pipeline
|
|
getFRCvalues.hh
|
2011-05-23
|
floflooo <>
|
[83d526]
Fix for the FRCurve pipeline
|
|
insert-sizes.cc
|
2006-10-26
|
mcschatz <>
|
[a72162]
Move files out of bankViewer directory
|
|
layoutCEstat.cc
|
2007-09-25
|
mpop <>
|
[720d9c]
Added layout CE stat
|
|
library-histogram.cc
|
2006-10-26
|
mcschatz <>
|
[a72162]
Move files out of bankViewer directory
|
|
list-linked-contigs.cc
|
2006-10-26
|
mcschatz <>
|
[a72162]
Move files out of bankViewer directory
|
|
listInsertStatus.cc
|
2007-07-27
|
mcschatz <>
|
[04e862]
Add tool for reporting status of inserts
|
|
listSingletonMates.cc
|
2006-10-26
|
mcschatz <>
|
[a72162]
Move files out of bankViewer directory
|
|
listSurrogates.pl
|
2005-05-11
|
mschatz <>
|
[c39184]
Update for new feature message
|
|
postCAqc.pl
|
2010-02-04
|
floflooo <>
|
[802140]
Created a centralized facility in TIGR::Foundat...
|
|
qc_combine.pl
|
2008-05-30
|
mcschatz <>
|
[30cfe7]
Improved
|
|
qcplots.R
|
2006-05-12
|
mcschatz <>
|
[310565]
Simplify QC plot generation
|
|
read-cov-plot.cc
|
2007-10-18
|
mcschatz <>
|
[a81c31]
Fix reverse'd contigs, add option to only print...
|
|
scaffoldRange2Ungapped.cc
|
2007-09-26
|
mpop <>
|
[6d34a1]
Added scaffoldRange2Ungapped to Makefile
|
|
suspiciousfeat2region.pl
|
2007-08-31
|
aphillippy <>
|
[c73031]
validation pipe cleaning
|
|
test-unitig-errorrates.pl
|
2005-06-24
|
mschatz <>
|
[70b3a3]
Updates
|
|
tiling2cam.pl
|
2004-04-28
|
aphillip <>
|
[e10599]
organizational overhaul
|