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[r81]: / tags / xmd-2.5.38 / ChangeLog Maximize Restore History
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# Change log generated from SVN
#
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r17 | jrifkin | 2011-02-18 16:07:14 -0500 (Fri, 18 Feb 2011) | 2 lines
Renamed relax.rcv to writevar.rcv to match example name.
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r16 | jrifkin | 2011-02-18 16:03:58 -0500 (Fri, 18 Feb 2011) | 2 lines
Fix WRITE VAR command in cdwrite.c.
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r15 | jrifkin | 2011-02-18 16:03:35 -0500 (Fri, 18 Feb 2011) | 2 lines
Correct examples.
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r14 | jrifkin | 2011-02-18 15:28:42 -0500 (Fri, 18 Feb 2011) | 1 line
Fix POTENTIAL FORMULA PAIR command that was demonstrated in example 'formeam'.
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r13 | jrifkin | 2011-02-18 14:50:44 -0500 (Fri, 18 Feb 2011) | 1 line
Script to verify the XMD runs the examples correctly.
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r12 | jrifkin | 2011-02-18 14:27:58 -0500 (Fri, 18 Feb 2011) | 1 line
Fix example select_near_radius so that atom near point 1.9,1.9,1.9 is picked to prevent random changes in atom picked which throughs off the example verification program.
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r9 | jrifkin | 2011-02-15 20:54:09 -0500 (Tue, 15 Feb 2011) | 2 lines
Create benchmark for new neighbor list algorithm.
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r8 | jrifkin | 2011-02-13 21:12:16 -0500 (Sun, 13 Feb 2011) | 2 lines
Update documentation about compiling for Parallel processing.
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r7 | jrifkin | 2011-02-13 21:06:10 -0500 (Sun, 13 Feb 2011) | 2 lines
Make NSEARCH CELL the default. Update SGML doc and check spelling.
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r4 | jrifkin | 2011-02-13 16:09:59 -0500 (Sun, 13 Feb 2011) | 2 lines
Initial import of XMD 2.5.37 into trunk.
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r1 | jrifkin | 2011-02-13 15:55:28 -0500 (Sun, 13 Feb 2011) | 2 lines
Initialize Trunk.
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# Change Log generated from CVS
2010-06-14 20:06 jrifkin
* configure.ac: Fix CELL neighbor search function. Fix WRITE COR
command when using simulations with free surfaces.
2010-06-14 20:02 jrifkin
* examples/: nanotube/nanotube.cor, nanotube/nanotube.xm,
nanotube/nanotube.xmo, nanotube2/nanotube2.cor,
nanotube2/nanotube2.xm, nanotube2/nanotube2.xmo: Add example
nanotube and nanotube2
2010-06-14 19:33 jrifkin
* src/: cdcor.c, cdeam.c, cdsubs.c, plotc.c: Fix CELL neighbor
search function. Fix WRITE COR command when using simulations
with free surfaces.
2010-06-05 22:44 jrifkin
* src/cell.c: Fix Cell neighbor bug reported by Alex Ovsyannikov.
2010-03-14 21:13 jrifkin
* configure.ac: Configure autoconf to set version to 2.5.35.
2010-03-14 21:11 jrifkin
* Makefile.am: Configure autoconf to automatically include
directories doc/ examples/ and xmdview-1.1/ in tarball.
2010-02-22 10:26 jrifkin
* doc/xmd.sgml: Add documentation for AVG, MIN and MAX options to
the WRITE {PARTICLE,FORCE,POSVEL,VELOCITY} commands.
2009-10-31 17:51 jrifkin
* examples/rdf/rdf.xm: Fixed comment.
2009-10-31 17:35 jrifkin
* LOG, examples/rdf/rdf.xm: Added new example for RDF, by request.
2009-10-24 12:35 jrifkin
* ChangeLog, LOG, Makefile.in, aclocal.m4, configure,
autom4te.cache/output.0, autom4te.cache/requests,
autom4te.cache/traces.0, doc/Makefile, doc/README,
src/Makefile.in, src/config.h.in: Added README to doc directory,
modified doc/Makefile to usd ps2pdf instead of dvipdf for making
PDF file. Also, updated ChangeLog using Perl script cvs2cl.pl.
2009-10-24 10:06 jrifkin
* src/: cdwrite.c, iomngr.c, strsub.c: Changed iomngr.c and
strsub.c to handle files with \r\n at end of lines. Changed
cdwrite.c to end program (rather than segfault) if output file
does not exist.
2009-09-26 21:03 jrifkin
* src/hash.c: Corrected ht_storekey(), assigned previously ununsed
return value from calloc() to curr->data.
2009-09-26 20:24 jrifkin
* LOG, configure.ac, configure.in: New LOG file and autoconf files.
2009-09-26 20:24 jrifkin
* src/: cdcor.c, cdeam.c, cdhouse.h, cdmd.c, cdstate.c, cdsubs.c,
cdwrite.c, hash.c, rcvio.c: Update files to remove warning from
printf() when variable size doesn't match varible format, and for
unassigned return values from functions fgets, fscanf and fread.
Also using new automake file configure.ac instead of old
configure.in; the new automake command is now simply 'autoreconf
--install' instead of the previous sequence of 6 or so auto*
commands.
2009-09-26 15:23 jrifkin
* examples/still/: still.e, still.xm: Add example for
Stillinger-Weber potential.
2009-09-08 11:35 jrifkin
* doc/xmd.sgml: Fix doc xmd.sgml, WRITE STRESS units from (erg cm)
to (erg) (thanks Yoonjun Kim)
2006-09-11 23:10 jrifkin
* doc/xmd.sgml: [no log message]
2006-09-11 22:13 jrifkin
* ChangeLog, LOG: [no log message]
2006-09-11 22:12 jrifkin
* examples/writevar/: writevar.xm, writevar.xmo: Writevar examples.
2006-09-11 20:51 jrifkin
* src/RTest, src/cdcons.c, src/cdmd.c, src/cdwrite.c,
src/grdevsub.c, src/hash.c, ChangeLog, LOG, doc/xmd.sgml: Added
LOG (to help keep track of development, src/RTest (for regression
testing). See ChangeLog for other changes.
2006-03-01 22:28 jrifkin
* ChangeLog, src/cdwrite.c, src/plotc.c: Added command options,
PLOT SYMBOL FILLALL, PLOT LABEL, WRITE NOHEAD.
2006-02-26 22:18 jrifkin
* ChangeLog, src/cdcor.c, src/cdsubs.c, src/cdsubs.h, src/plotc.c,
src/rcvio.c, src/xmd.c: Fixed plots when box has free surface,
and used automake/autoconf VERSION string.
2005-04-21 22:20 jrifkin
* ChangeLog, src/cdmd.c, src/grdevsub.c: In cdmd.c, remove unneeded
'#include <values.h>' In grdevsub.c, rename 'round()' to
'_round()' for compatibility in OS X.
2005-04-21 22:15 jrifkin
* ChangeLog: [no log message]
2005-04-21 22:14 jrifkin
* src/: cdeam.c, strsub.c: In strsub.c: Add function to parse
Fortran Exponents in Real numbers (using D instead of e) In
cdeam.c: Fix functions to read dynamo format 'funcfl' files for
elements (not yet working).
2005-03-20 16:33 jrifkin
* src/cdeam.c: Update comments.
2005-03-13 13:59 jrifkin
* src/cddoc.c: Add option [qtype] to quench command's command line
documentation.
2005-03-13 13:44 jrifkin
* src/cdmd.c: Fixed dot production of F and v in QuenchVelocity.
2005-03-04 07:39 jrifkin
* TODO, doc/xmd.sgml: xmd.sgml - fix two typos.
2005-03-01 05:50 jrifkin
* src/cdeam.c: Cosmetic changes to nesting format.
2005-02-28 07:19 jrifkin
* src/: cdeam.c, cdhouse.h: Add code to read Dynamo element files
to cdeam.c, clean up comments in cdhouse.h.
2005-02-27 14:50 jrifkin
* initmake: Short script to call aclocal, autoconf, autoheader,
automake -a in order to set up configure.
2005-01-07 22:37 jrifkin
* src/cell2.c: Move declaration to top of function def (to appease
gcc/AIX 5.2).
2005-01-07 22:33 jrifkin
* Makefile.in, aclocal.m4, configure, autom4te.cache/output.0,
autom4te.cache/requests, autom4te.cache/traces.0,
src/Makefile.SMP, src/Makefile.in, src/README.compile,
src/README.compile.obsolete: Remove old makefiles.
2005-01-06 12:43 jrifkin
* src/cdcsi.c: remove redundant line in csi_read_potential
2005-01-04 11:33 jrifkin
* README: Format changes.
2005-01-04 08:19 jrifkin
* doc/Makefile: Add command to make .pdf version of manual.
2005-01-03 19:55 jrifkin
* src/cdstep.c, src/cdstep.h, src/cdstil.c, src/cdsubs.c,
src/cdsubs.h, src/cdthread.c, src/cdthread.h, src/cdvect.c,
src/cdvect.h, src/cdwrite.c, src/cell.c, src/cell2.c,
src/grdevsub.c, src/grdevsub.h, src/hash.c, src/hash.h,
src/iomngr.c, src/iomngr.h, src/neigh.c, src/neigh.h,
src/parse.c, src/parse.h, src/particle.h, src/plotc.c,
src/plotc.h, src/README.compile, src/README.compile.obsolete,
src/README.source, src/TODO, src/rcvio.c, src/rcvio.h,
src/sortsub.c, src/Makefile.am, src/config.h.in, src/strsub.c,
src/strsub.h, src/xmd.c, src/Makefile.in, src/sortsub.h,
xmdview-1.1/hideatom.h, xmdview-1.1/Makefile, xmdview-1.1/README,
xmdview-1.1/rcvio.c, xmdview-1.1/rcvio.h, xmdview-1.1/Imakefile,
xmdview-1.1/cdcorlt.c, xmdview-1.1/direct.c,
xmdview-1.1/direct.h, xmdview-1.1/grdevsub.c,
xmdview-1.1/grdevsub.h, xmdview-1.1/particle.h,
xmdview-1.1/Compile, xmdview-1.1/llist2.c, xmdview-1.1/llist2.h,
xmdview-1.1/cdalloclt.c, xmdview-1.1/checkmark,
xmdview-1.1/hideatom2.c, xmdview-1.1/cdalloc.h,
xmdview-1.1/cdcor.h, xmdview-1.1/cdhouse.c,
xmdview-1.1/cdhouse.h, xmdview-1.1/xmdview.c,
xmdview-1.1/xmdview.h, xmdview-1.1/iofunc.c,
xmdview-1.1/iofunc.h, xmdview-1.1/strsub.c, xmdview-1.1/strsub.h,
autom4te.cache/requests, bench/bench.e, bench/bench.xm,
xmdview-1.1/doc/xmdview.htm, xmdview-1.1/doc/xmdview.txt,
xmdview-1.1/examples/b2.cor, xmdview-1.1/examples/b2.xm,
xmdview-1.1/examples/colortype.fil, xmdview-1.1/examples/l12.cor,
xmdview-1.1/examples/l12.xm, autom4te.cache/output.0,
autom4te.cache/traces.0: Initial import.
2005-01-03 19:55 jrifkin
* src/cdstep.c, src/cdstep.h, src/cdstil.c, src/cdsubs.c,
src/cdsubs.h, src/cdthread.c, src/cdthread.h, src/cdvect.c,
src/cdvect.h, src/cdwrite.c, src/cell.c, src/cell2.c,
src/grdevsub.c, src/grdevsub.h, src/hash.c, src/hash.h,
src/iomngr.c, src/iomngr.h, src/neigh.c, src/neigh.h,
src/parse.c, src/parse.h, src/particle.h, src/plotc.c,
src/plotc.h, src/README.compile, src/README.compile.obsolete,
src/README.source, src/TODO, src/rcvio.c, src/rcvio.h,
src/sortsub.c, src/Makefile.am, src/config.h.in, src/strsub.c,
src/strsub.h, src/xmd.c, src/Makefile.in, src/sortsub.h,
xmdview-1.1/hideatom.h, xmdview-1.1/Makefile, xmdview-1.1/README,
xmdview-1.1/rcvio.c, xmdview-1.1/rcvio.h, xmdview-1.1/Imakefile,
xmdview-1.1/cdcorlt.c, xmdview-1.1/direct.c,
xmdview-1.1/direct.h, xmdview-1.1/grdevsub.c,
xmdview-1.1/grdevsub.h, xmdview-1.1/particle.h,
xmdview-1.1/Compile, xmdview-1.1/llist2.c, xmdview-1.1/llist2.h,
xmdview-1.1/cdalloclt.c, xmdview-1.1/checkmark,
xmdview-1.1/hideatom2.c, xmdview-1.1/cdalloc.h,
xmdview-1.1/cdcor.h, xmdview-1.1/cdhouse.c,
xmdview-1.1/cdhouse.h, xmdview-1.1/xmdview.c,
xmdview-1.1/xmdview.h, xmdview-1.1/iofunc.c,
xmdview-1.1/iofunc.h, xmdview-1.1/strsub.c, xmdview-1.1/strsub.h,
autom4te.cache/requests, bench/bench.e, bench/bench.xm,
xmdview-1.1/doc/xmdview.htm, xmdview-1.1/doc/xmdview.txt,
xmdview-1.1/examples/b2.cor, xmdview-1.1/examples/b2.xm,
xmdview-1.1/examples/colortype.fil, xmdview-1.1/examples/l12.cor,
xmdview-1.1/examples/l12.xm, autom4te.cache/output.0,
autom4te.cache/traces.0: Initial revision
2005-01-03 19:52 jrifkin
* Makefile.in, CONTENTS, COPYING, README, configure.in, aclocal.m4,
AUTHORS, Makefile.am, NEWS, config.h.in, configure, ChangeLog,
contrib/strain/Makefile, contrib/strain/strnsub.c,
contrib/strain/strnsub.h, contrib/strain/cor0.c,
contrib/strain/cor0.h, contrib/strain/matrix.c,
contrib/strain/matrix.h, contrib/strain/cstrain.c,
contrib/strain/cstrain.h, contrib/scripts/README,
contrib/scripts/varf, contrib/scripts/varflat,
contrib/strain/strain.c, contrib/strain/strsub.c,
contrib/strain/strsub.h, doc/Makefile, doc/xmd.sgml,
examples/nial.txt, examples/README, examples/rual.txt,
examples/Still.txt, examples/au.txt, examples/co.txt,
examples/xmdexam.html, examples/cavity.cor, examples/CSi.txt,
examples/nbal.txt, examples/mc/mc.xm, examples/csi/csi.xmo,
examples/mc/mc.cor, examples/mc/mc.xmo, examples/csi/csi.e,
examples/csi/csi.xm, examples/plot/plot.ps,
examples/plot/plot.xm, examples/plot/plot.xmo,
examples/csipair/csipair.e, examples/csipair/csipair.xm,
examples/csipair/csipair.cor, examples/csipair/csipair.xmo,
examples/relax/relax.e, examples/relax/relax.xm,
examples/relax/relax.rcv, examples/relax/relax.xmo,
examples/screw/screw.cor, examples/screw/screw.xm,
examples/screw/screw.xmo, examples/surfe/surfe.xm,
examples/surfe/surfe.xmo, examples/econst2/econst2.xm,
examples/econst2/econst2.xmo, examples/formpair/formpair.xm,
examples/formpair/formpair.xmo, examples/testtag/test.cor,
examples/testtag/testtag.cor, examples/testtag/testtag.xm,
examples/testtag/testtag.xmo, examples/cavity/cavity.xm,
examples/cavity/cavity.e, examples/cavity/cavity.cor,
examples/cavity/cavity.xmo, examples/velocity/velocity.xm,
examples/velocity/velocity.e, examples/velocity/velocity.cor,
examples/velocity/velocity.xmo, examples/colorhsb/colorhsb.ps,
examples/colorhsb/colorhsb.xm, examples/colorhsb/colorhsb.xmo,
examples/colorhue/colorhue.ps, examples/colorhue/colorhue.xm,
examples/colorhue/colorhue.xmo, examples/colorrgb/colorrgb.ps,
examples/colorrgb/colorrgb.xm, examples/colorrgb/colorrgb.xmo,
examples/econst/econst.xmo, examples/econst/econst.xm,
examples/formeam/formeam.xm, examples/formeam/formeam.xmo,
examples/stress/stress.xm, examples/stress/stress.str,
examples/select_near_radius/select_near_radius.xm,
examples/select_near_radius/select_near_radius.xmo,
examples/stress/stress.xmo, examples/timestep/timestep.e,
examples/timestep/timestep.xm, examples/timestep/timestep.xmo,
src/CheckMem, src/cdalloc.c, src/cdalloc.h, src/cdboun.c,
src/cdboun.h, src/cdcomm.c, src/cdcons.c, src/cdcons.h,
src/cdcor.c, src/cdcor.h, src/cdcsi.c, src/cddisp.c, src/cddoc.c,
src/cddoc.h, src/cdeam.c, src/cdeam.h, src/cdfill.c,
src/cdfill.h, src/cdfunc.c, src/cdfunc.h, src/cdhouse.c,
src/cdhouse.h, src/cditemp.c, src/cditemp.h, src/cdmc.c,
src/Makefile.SMP, src/cdmd.c, src/cdpairf.c, src/cdpairf.h,
src/cdplot.h, src/cdqu.c, src/cdrepeat.c, src/cdsearch.c,
src/cdsearch.h, src/cdselect.c, src/cdstate.c: Initial import.
2005-01-03 19:52 jrifkin
* Makefile.in, CONTENTS, COPYING, README, configure.in, aclocal.m4,
AUTHORS, Makefile.am, NEWS, config.h.in, configure, ChangeLog,
contrib/strain/Makefile, contrib/strain/strnsub.c,
contrib/strain/strnsub.h, contrib/strain/cor0.c,
contrib/strain/cor0.h, contrib/strain/matrix.c,
contrib/strain/matrix.h, contrib/strain/cstrain.c,
contrib/strain/cstrain.h, contrib/scripts/README,
contrib/scripts/varf, contrib/scripts/varflat,
contrib/strain/strain.c, contrib/strain/strsub.c,
contrib/strain/strsub.h, doc/Makefile, doc/xmd.sgml,
examples/nial.txt, examples/README, examples/rual.txt,
examples/Still.txt, examples/au.txt, examples/co.txt,
examples/xmdexam.html, examples/cavity.cor, examples/CSi.txt,
examples/nbal.txt, examples/mc/mc.xm, examples/csi/csi.xmo,
examples/mc/mc.cor, examples/mc/mc.xmo, examples/csi/csi.e,
examples/csi/csi.xm, examples/plot/plot.ps,
examples/plot/plot.xm, examples/plot/plot.xmo,
examples/csipair/csipair.e, examples/csipair/csipair.xm,
examples/csipair/csipair.cor, examples/csipair/csipair.xmo,
examples/relax/relax.e, examples/relax/relax.xm,
examples/relax/relax.rcv, examples/relax/relax.xmo,
examples/screw/screw.cor, examples/screw/screw.xm,
examples/screw/screw.xmo, examples/surfe/surfe.xm,
examples/surfe/surfe.xmo, examples/econst2/econst2.xm,
examples/econst2/econst2.xmo, examples/formpair/formpair.xm,
examples/formpair/formpair.xmo, examples/testtag/test.cor,
examples/testtag/testtag.cor, examples/testtag/testtag.xm,
examples/testtag/testtag.xmo, examples/cavity/cavity.xm,
examples/cavity/cavity.e, examples/cavity/cavity.cor,
examples/cavity/cavity.xmo, examples/velocity/velocity.xm,
examples/velocity/velocity.e, examples/velocity/velocity.cor,
examples/velocity/velocity.xmo, examples/colorhsb/colorhsb.ps,
examples/colorhsb/colorhsb.xm, examples/colorhsb/colorhsb.xmo,
examples/colorhue/colorhue.ps, examples/colorhue/colorhue.xm,
examples/colorhue/colorhue.xmo, examples/colorrgb/colorrgb.ps,
examples/colorrgb/colorrgb.xm, examples/colorrgb/colorrgb.xmo,
examples/econst/econst.xmo, examples/econst/econst.xm,
examples/formeam/formeam.xm, examples/formeam/formeam.xmo,
examples/stress/stress.xm, examples/stress/stress.str,
examples/select_near_radius/select_near_radius.xm,
examples/select_near_radius/select_near_radius.xmo,
examples/stress/stress.xmo, examples/timestep/timestep.e,
examples/timestep/timestep.xm, examples/timestep/timestep.xmo,
src/CheckMem, src/cdalloc.c, src/cdalloc.h, src/cdboun.c,
src/cdboun.h, src/cdcomm.c, src/cdcons.c, src/cdcons.h,
src/cdcor.c, src/cdcor.h, src/cdcsi.c, src/cddisp.c, src/cddoc.c,
src/cddoc.h, src/cdeam.c, src/cdeam.h, src/cdfill.c,
src/cdfill.h, src/cdfunc.c, src/cdfunc.h, src/cdhouse.c,
src/cdhouse.h, src/cditemp.c, src/cditemp.h, src/cdmc.c,
src/Makefile.SMP, src/cdmd.c, src/cdpairf.c, src/cdpairf.h,
src/cdplot.h, src/cdqu.c, src/cdrepeat.c, src/cdsearch.c,
src/cdsearch.h, src/cdselect.c, src/cdstate.c: Initial revision