Search Results for "matlab medical image processing"
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Showing 122 open source projects for "matlab medical image processing"
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Large Language Models (LLMs)
Connect MATLAB to LLM APIs, including OpenAI® Chat Completions
This repository enables MATLAB to connect with large language models (LLMs) such as OpenAI's ChatGPT, DALL-E, Azure OpenAI, and Ollama, integrating their natural language processing and image generation capabilities directly within MATLAB environments. It facilitates creating chatbots, summarizing text, and image generation, among other tasks. -
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MatImage
Image Processing library for Matlab
matImage is an open-source MATLAB library for image processing and analysis. It provides a variety of tools for image enhancement, segmentation, and feature extraction. It’s especially useful for users working on biomedical images or those needing detailed image analysis in MATLAB. -
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C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.
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MATLAB and Simulink for Students
An awesome list of helpful resources for students learning MATLAB
Are you a new MATLAB user seeking helpful tips and tricks? Are you a member of a student society in search of engaging workshops? Or perhaps you're looking for opportunities to test your MATLAB skills through student competitions or challenges? Look no further! Our awesome list repository below is a resource that caters to all these needs. Whether you're starting from scratch or aiming to enhance your existing knowledge, you'll find a wealth of information to help you learn MATLAB and make... -
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gptoolbox
Matlab toolbox for Geometry Processing
gptoolbox is a comprehensive MATLAB toolbox for geometry processing, optimization, and image processing. It provides a wide range of utility functions for working with triangle and tetrahedral meshes, making it useful for tasks in computer graphics, computational geometry, and 3D modeling. The toolbox includes wrappers for external software such as TetGen, Triangle, QSlim, and meshfix, as well as functions for mesh smoothing, cleanup, deformation, and parameterization. ... -
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MATLAB Deep Learning Model Hub
Discover pretrained models for deep learning in MATLAB
Discover pre-trained models for deep learning in MATLAB. Pretrained image classification networks have already learned to extract powerful and informative features from natural images. Use them as a starting point to learn a new task using transfer learning. Inputs are RGB images, the output is the predicted label and score. -
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ImageMagick
ImageMagick 7
...It can be used to create, edit, compose, or convert bitmap images, and supports a wide range of file formats, including JPEG, PNG, GIF, TIFF, and PDF. ImageMagick is widely used in industries such as web development, graphic design, and video editing, as well as in scientific research, medical imaging, and astronomy. Its versatile and customizable nature, along with its robust image processing capabilities, make it a popular choice for a wide range of image-related tasks. ImageMagick includes a command-line interface for executing complex image processing tasks, as well as APIs for integrating its features into software applications. ... -
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libvips
A fast image processing library with low memory needs
libvips is a demand-driven, horizontally threaded image processing library. Compared to similar libraries, libvips runs quickly and uses little memory. libvips is licensed under the LGPL 2.1+. It has around 300 operations covering arithmetic, histograms, convolution, morphological operations, frequency filtering, colour, resampling, statistics and others. It supports a large range of numeric types, from 8-bit int to 128-bit complex. -
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Octave Forge
A collection of packages providing extra functionality for GNU Octave
Octave Forge is a central location for collaborative development of packages for GNU Octave. The Octave Forge packages expand Octave's core functionality by providing field specific features via Octave's package system. See https://octave.sourceforge.io/packages.php for a list of all available packages. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and...">
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SMILI
Scientific Visualisation Made Easy
...It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). ...">
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BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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ColorI-DT
A tool for the quantitative evaluation of differences in color images
ColorI-DT (Color Image Difference Tool): Colori-DT is an open-source tool developed in MATLAB and designed to measure color differences in images. It is intended to provide researchers and professionals with an accurate and user-friendly means of assessing color variation and discrepancies in digital images according to different metrics. Contacts: Filippo Piccinini (emails: filippo.piccinini@irst.emr.it; f.piccinini@unibo.it) Repository: https://sourceforge.net/p/colori-dt/ How... -
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CT4AM
Tools for 3D image analysis of additively manufactured parts
...Moreover, data analysis and processing of G-code are key assets of the project. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, CT4AM is a collection of small and simple apps that have already been successfully used to solve various problems in materials science and process visualization. -
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WingSegment
WingSegment: A tool for Analysis and Modeling of Insect Wings
WingSegment is a MATLAB app-designed tool employing a hybrid approach of computer vision and graph theory for precise insect wing image segmentation. WingSegment detects cells, junctions, Pterostigma, and venation patterns, measuring geometric features and generating Voronoi patterns. The tool utilizes region-growing, thinning, and Dijkstra's algorithms for boundary detection, junction identification, and vein path extraction. It provides histograms and box plots of geometric features,... -
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MELAGE is a neuroimaging software developed for visualizing and processing medical images, both Ultrasound and Magnetic Resonance Images (MRIs). Specially it has been prepared for neuroimaging of newborns, it is a versatile platform that allows the visualization of many types of medical images. It allows to load two, three and four-dimensional images of both techniques and in the case of 3D images it allows the simultaneous visualization of the three orthogonal planes which facilitates the...
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FEATool Multiphysics - FEA & CFD Toolbox
FEATool Multiphysics is an easy-to-use FEA and CFD Simulation Toolbox
FEATool Multiphysics (https://www.featool.com) is a fully integrated toolbox for computer aided engineering CAE, finite element analysis & fluid dynamics simulations. With a very easy-to-use GUI, anyone is now able to quickly set up and perform large scale dynamical and complex engineering physics simulations, with coupled fluid flow, heat transfer, structural mechanics, chemical transport, and electromagnetics effects, without having to learn complex programming. In addition to... -
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Iris
2-photon scanning software
Iris is a LabVIEW package, developed at the Keller Lab (Basel FMI), for running 2-photon microscopes. It is supplied with auxiliary software for recording additional experimental parameters, such as behavioral states. Iris is freely available. You may modify it as you wish and use it as you wish, so long as you comply with the licence terms (see below). However, please note that we are **unable to offer any guarantee of support**. There are two exceptions to this. 1) If you find a... -
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tdsft
TDSFT (Two-Dimensional Segmentation Fusion Tool)
Given multiple segmentations related to the same tumor, statistical metrics could be exploited to determine the most reliable one, from there identified as ground truth. Numerous algorithms have been developed over time, but to date, there is no validated method for this procedure. Therefore, research is still active in this area. Two-Dimensional Segmentation Fusion Tool (TDSFT) is an open-source tool developed in MATLAB and distributed as a standalone application for MAC, Linux, and... -
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The Scientific Image Analysis (SIA) software is an image processing application written in MATLAB for scientific analysis of images and video. SIA is designed to be intuitive and easy to use, and is free to download. While SIA is designed to meet the image processing needs of biologists, its functionalities can be used for a wide variety of applications.
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plastimatch
Volumetric image processing software
Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). -
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ImageJ2x
Java Image Processing Program
ImageJ2x is medical image processing program inspired by NIH Image for the Macintosh. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. There can be many image formats including TIFF, GIF, JPEG, BMP, DICOM, PNG, FITS and "raw" and ... Read and supports "stacks" (stack), a series of images that share a single window. -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. ... -
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DDMaker
Local Distribution Density Map Maker
DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from either RGB color, grey level or binary images. DDMaker local density analysis permit to selectively denoise the signal, visualize and quantify its distribution and threshold the image basing on local density. -
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VOP post-processing
Post-processing algorithms for SAR compression
Here we introduce to algorithms for post-processing of VOP sets. Algorithm 1 reduces the Overestimation for a given set of VOPs. Especially useful to reduce the overestimation in VOP sets calculated with the compression algorithms by Lee et al. and Orzada et al. Algorithm 2 tests a given set of VOPs for redundancy. It can be used to reduce the number of VOPs in a dataset produced by Eichfelder and Gebhardt's algorithm. Especially useful when you have a vendor provided VOP set only.