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Showing 20 open source projects for "chemistry"

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  • 1
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 10 This Week
    Last Update:
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  • 2
    Quiz/Survey/Test - QST

    Quiz/Survey/Test - QST

    A Free, complete, enterprise grade, open source exam management system

    ...From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly Chosen Questions, Print a QST, Auto Marking, Display explanations for questions, easily administer users, etc.) that rival or surpass those found in commercial online examination/testing systems. ...
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    Downloads: 43 This Week
    Last Update:
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  • 3
    'isotope' is a small command-line utility to calculate the isotope pattern for a given chemical formula. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
    Last Update:
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  • 4
    hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
    Last Update:
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  • 5
    wxProdOp

    wxProdOp

    NMR Product Operator Calculator

    The program does nmr product operator calculations for one, two, three and four spins. Receiver phase cycling is possible in conjunction with pulse phase cycling to simulate coherence pathway selection. An extensive manual and help files are included. Currently running under Linux and Windows.
    Downloads: 2 This Week
    Last Update:
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  • 6

    AutoMap

    AutoMap is a tool for structural biology and drug design.

    AutoMap takes a series of poses obtained from molecular docking and applies the site, epitope and conformational mapping techniques to the poses to select likely ligand binding modes.
    Downloads: 0 This Week
    Last Update:
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  • 7
    The Blue Obelisk Data Repository lists many important chemoinformatics data such as element and isotope properties, atomic radii, etc. including references to original literature. Developers can use this repository to make their software interoperable.
    Downloads: 2 This Week
    Last Update:
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  • 8

    psicode

    An open-source quantum chemistry program package

    PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.
    Downloads: 1 This Week
    Last Update:
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  • 9
    mobcalPARSER

    mobcalPARSER

    A cross-platform interface for the *.mfj file format.

    mobcalPARSER is a command line based PERL frontend/interface for MOBCAL with limited wrapper functionality. "MOBCAL - A Program to Calculate Mobilities" is available from Professor Martin F. Jarrold's webpage http://www.indiana.edu/~nano/software.html.
    Downloads: 0 This Week
    Last Update:
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    DataHub is the leading open-source data catalog helping teams discover, understand, and govern their data assets.

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  • 10
    A command-line biochemical network compiler for systems biology.
    Downloads: 0 This Week
    Last Update:
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  • 11
    sCalc
    A GUI program written in Perl and utilizing Tk that is meant to solve equations commonly found in math and science. Current equation set is based upon High School Geometry, Algebra II, Trigonometry, and Chemistry with more to come.
    Downloads: 0 This Week
    Last Update:
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  • 12
    PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".
    Downloads: 0 This Week
    Last Update:
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  • 13
    ALC (Automated Layer Construction) is a computer program that highly simplifies the building of reduced modular models of signaling systems, according to the layer-based approach.
    Downloads: 0 This Week
    Last Update:
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  • 14
    Wio-gpc is a command line driven perl application designed for polymers molecular weight calculations based on chromatographic data. Results of GPC, SEC or GFC analysis can be converted to Mn, Mw and molecular weight distributions (MWD).
    Downloads: 0 This Week
    Last Update:
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  • 15
    IFEFFIT is a library and set of interactive programs for the analysis of x-ray absorption fine-structure (XAFS) data. IFEFFIT combines state-of-the-art analysis algorithms with graphical display of XAFS data, and general data manipulation. It can be
    Downloads: 5 This Week
    Last Update:
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  • 16
    GVIB is a user friendly package for vibrational analysis. Given a molecular geometry, it will calculate vibrational frequencies and intensities using anharmonic internuclear potential.
    Downloads: 0 This Week
    Last Update:
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  • 17
    Gaussian Output Tools is a package of simple scripts to extract data from Gaussian output files.
    Downloads: 0 This Week
    Last Update:
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  • 18
    MeltDNA Tool For Prediction of DNA Duplex Hybridization & Melting Thermodynamics (delta G°, delta H° and delta S° ,Tm,Ta Prediction)
    Downloads: 0 This Week
    Last Update:
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  • 19
    FFDev is a suite of utilities for the creation (and deployment) of custom force fields (interaction potentials) for atomistic simulation, derived wholly or in part from ab initio quantum chemistry calculations.
    Downloads: 0 This Week
    Last Update:
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  • 20
    KHorn is a universal easy to use CAS (Computer Algebra System). It will be usable for Physics, Chemistry, Mathematics and other natural sciences. KHorn is based on the GMP library.
    Downloads: 0 This Week
    Last Update:
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