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Showing 3 open source projects for "fasta"

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1

DORY

For mining KASH proteins (SUN domain-interacting proteins)

DORY is a java program developed for searching KASH protein in large protein databases (in FASTA format). DORY is upgraded to DORY2. DORY2 required BLAST+ to run. ***Please make sure BLAST+ is installed on your computer.*** Please see the following publication for detail: Zhou X, Graumann K, Wirthmueller L, Jones JDG, Meier I (2014) Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants.

Downloads: 0 This Week

Last Update: 2017-05-05
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2

Javamony

A Student's Approach to the Phylogenetic Problem

Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve...

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Downloads: 0 This Week

Last Update: 2013-05-30
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3

Sequence_Splitter

This is a small and easy-to-use bio informatics tool for rookie and expert biologists to split files which contain sequences (these files can contain nucleotide, genome or protein sequences) into individual ' .fasta ' files.

Downloads: 48 This Week

Last Update: 2014-04-23
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