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Chu et al., 2023 - Google Patents

SCAMPP+ FastTree: improving scalability for likelihood-based phylogenetic placement

Chu et al., 2023

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Document ID
129797111887143795
Author
Chu G
Warnow T
Publication year
Publication venue
Bioinformatics Advances

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Snippet

Phylogenetic placement is the problem of placing 'query'sequences into an existing tree (called a 'backbone tree'). One of the most accurate phylogenetic placement methods to date is the maximum likelihood-based method pplacer, using RAxML to estimate numeric …
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    • G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
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