From 5694284f8febdbfc8eaa33a73e4746c63282b6e1 Mon Sep 17 00:00:00 2001 From: "Miguel A. Fortuna" Date: Tue, 24 Aug 2021 18:54:26 +0200 Subject: [PATCH] reasoning performed and minor edits --- WORKFLOW.md | 2 +- modules/object_property_module-annotated.owl | 15 ++++-- modules/object_property_module.owl | 9 ++++ ontoavida-edit.owl | 51 ------------------- ...check_object_property_module-annotated.tsv | 2 + .../quality_control_check_ontoavida-edit.tsv | 2 - results/ontoavida-annotated.owl | 3 +- results/ontoavida-merged.owl | 1 + results/ontoavida-reasoned.owl | 1 + results/ontoavida-reduced.owl | 1 + results/ontoavida-relaxed.owl | 1 + templates/object_property_template.tsv | 1 + 12 files changed, 31 insertions(+), 58 deletions(-) diff --git a/WORKFLOW.md b/WORKFLOW.md index 5a1dc7e..cd74e44 100644 --- a/WORKFLOW.md +++ b/WORKFLOW.md @@ -345,7 +345,7 @@ robot reduce \ ``` robot annotate \ --input results/ontoavida-reduced.owl \ - --version-iri "http://purl.obolibrary.org/obo/ontoavida-v2012-08-12.owl" \ + --version-iri "http://purl.obolibrary.org/obo/ontoavida-v2012-08-23.owl" \ --output results/ontoavida-annotated.owl ``` diff --git a/modules/object_property_module-annotated.owl b/modules/object_property_module-annotated.owl index 77e8dec..d4d3759 100644 --- a/modules/object_property_module-annotated.owl +++ b/modules/object_property_module-annotated.owl @@ -1,6 +1,6 @@ - - + Ontology module to be added to the ontoavida-edit ontology Ontology module from the object_property template OntoAvida by https://fortunalab.org is licensed under CC BY 4.0. @@ -27,6 +27,15 @@ + + + + + + + + + diff --git a/modules/object_property_module.owl b/modules/object_property_module.owl index 1aebb42..49095b6 100644 --- a/modules/object_property_module.owl +++ b/modules/object_property_module.owl @@ -21,6 +21,15 @@ + + + + + + + + + diff --git a/ontoavida-edit.owl b/ontoavida-edit.owl index b2fb239..52aeec9 100644 --- a/ontoavida-edit.owl +++ b/ontoavida-edit.owl @@ -72266,57 +72266,6 @@ More information can be found at https://obofoundry.org/ontology/ontoavida.html< - - - - - An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). - Chris Mungall - http://www.ncbi.nlm.nih.gov/pubmed/19278549 - This relation groups a pair of inverse relations, parasite of and parasitized by - - interacts with via parasite-host interaction - - - - - - - - - - - - - Pediculus humanus capitis parasite of human - Chris Mungall - parasitizes - direct parasite of - - parasite of - http://eol.org/schema/terms/parasitizes - - - - - - - - - - - - Chris Mungall - has parasite - parasitised by - directly parasitized by - - parasitized by - http://eol.org/schema/terms/hasParasite - - - - + An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). Chris Mungall diff --git a/results/ontoavida-merged.owl b/results/ontoavida-merged.owl index 3bf0ff3..d399640 100644 --- a/results/ontoavida-merged.owl +++ b/results/ontoavida-merged.owl @@ -72269,6 +72269,7 @@ More information can be found at https://obofoundry.org/ontology/ontoavida.html< + An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). Chris Mungall diff --git a/results/ontoavida-reasoned.owl b/results/ontoavida-reasoned.owl index 3bf0ff3..d399640 100644 --- a/results/ontoavida-reasoned.owl +++ b/results/ontoavida-reasoned.owl @@ -72269,6 +72269,7 @@ More information can be found at https://obofoundry.org/ontology/ontoavida.html< + An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). Chris Mungall diff --git a/results/ontoavida-reduced.owl b/results/ontoavida-reduced.owl index 3bf0ff3..d399640 100644 --- a/results/ontoavida-reduced.owl +++ b/results/ontoavida-reduced.owl @@ -72269,6 +72269,7 @@ More information can be found at https://obofoundry.org/ontology/ontoavida.html< + An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). Chris Mungall diff --git a/results/ontoavida-relaxed.owl b/results/ontoavida-relaxed.owl index 3bf0ff3..d399640 100644 --- a/results/ontoavida-relaxed.owl +++ b/results/ontoavida-relaxed.owl @@ -72269,6 +72269,7 @@ More information can be found at https://obofoundry.org/ontology/ontoavida.html< + An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO). Chris Mungall diff --git a/templates/object_property_template.tsv b/templates/object_property_template.tsv index 883b8ca..97d0584 100644 --- a/templates/object_property_template.tsv +++ b/templates/object_property_template.tsv @@ -1,4 +1,5 @@ term identifier label textual definition type subproperty inverse property characteristic domain range ID LABEL A IAO:0000115 TYPE SP % IP % CHARACTERISTIC DOMAIN RANGE +RO:0002443 object property owl:topObjectProperty symmetric RO:0002444 object property asymmetric ONTOAVIDA:00000018 ONTOAVIDA:00000017 RO:0002445 object property asymmetric ONTOAVIDA:00000017 ONTOAVIDA:00000018 -- GitLab