R

rnaseq

An R package to extrapolate phenotypic fingerprint from RNAseq to determine cell culture media.

A complete overview of the possible microrganisms present in the sample using the diagnostic tool Kraken2.

Snakemake RNAseq processing pipeline (STAR or Salmon) via a SLURM cluster

A Nextflow pipeline for processing RNAseq reads on Google Life Sciences pipeline