diff --git a/erpnext/accounts/page/bank_reconciliation/auto_bank_reconciliation.py b/erpnext/accounts/page/bank_reconciliation/auto_bank_reconciliation.py
index e5bb72c799390e5035358db4bd40a4ae078a0289..494ba3ac0b493a65a9e80310816fd3e36fc59207 100644
--- a/erpnext/accounts/page/bank_reconciliation/auto_bank_reconciliation.py
+++ b/erpnext/accounts/page/bank_reconciliation/auto_bank_reconciliation.py
@@ -44,6 +44,9 @@ def _reconcile_transactions(bank_transactions):
 class AutoBankReconciliation:
 	def __init__(self, bank_transaction):
 		self.bank_transaction = bank_transaction
+		self.bank_account = frappe.get_cached_value(
+			"Bank Account", self.bank_transaction.get("bank_account"), "account"
+		)
 		self.documents = []
 
 	def reconcile(self):
@@ -124,7 +127,11 @@ class AutoBankReconciliation:
 	def get_corresponding_payment_entries(self, matching_name):
 		if frappe.db.exists("Payment Entry", matching_name):
 			doc = frappe.get_doc("Payment Entry", matching_name)
-			if doc.docstatus == 1 and doc.status == "Unreconciled":
+			if (
+				doc.docstatus == 1
+				and doc.status == "Unreconciled"
+				and self.bank_account in [doc.paid_from, doc.paid_to]
+			):
 				return doc
 
 
diff --git a/erpnext/accounts/page/bank_reconciliation/stripe_reconciliation.py b/erpnext/accounts/page/bank_reconciliation/stripe_reconciliation.py
index 0f8fc6366912cd4a2c4cdce0d8ff432598aada06..a38b2414e4f650ea699945d5110de942b0a2e110 100644
--- a/erpnext/accounts/page/bank_reconciliation/stripe_reconciliation.py
+++ b/erpnext/accounts/page/bank_reconciliation/stripe_reconciliation.py
@@ -45,6 +45,9 @@ class StripeReconciliation:
 	def __init__(self, stripe_settings, bank_transaction):
 		self.stripe_settings = stripe_settings
 		self.bank_transaction = bank_transaction
+		self.bank_account = frappe.get_cached_value(
+			"Bank Account", self.bank_transaction.get("bank_account"), "account"
+		)
 		self.date = self.bank_transaction.get("date")
 		self.payouts = []
 		self.filtered_payout = {}
@@ -130,16 +133,24 @@ class StripeReconciliation:
 
 				for doctype in ["Payment Entry", "Sales Invoice", "Purchase Invoice", "Expense Claim"]:
 					reference_field = self.get_reference_field(doctype)
+					filters = {"unreconciled_amount": ("!=", 0), "docstatus": 1, reference_field: ("is", "set")}
+					if doctype == "Payment Entry":
+						filters["paid_to"] = self.bank_account
+
+					or_filters = [
+						{reference_field: ("like", transaction.get("charge", {}).get("id"))},
+						{reference_field: ("like", transaction.get("charge", {}).get("payment_intent"))},
+					]
+
+					if transaction.get("charge", {}).get("invoice"):
+						or_filters.append({reference_field: ("like", transaction.get("charge", {}).get("invoice"))})
+
 					documents = [
 						dict(x, **{"doctype": doctype})
 						for x in frappe.get_all(
 							doctype,
-							filters={"unreconciled_amount": ("!=", 0), "docstatus": 1},
-							or_filters=[
-								{reference_field: ("like", transaction.get("charge", {}).get("id"))},
-								{reference_field: ("like", transaction.get("charge", {}).get("invoice"))},
-								{reference_field: ("like", transaction.get("charge", {}).get("payment_intent"))},
-							],
+							filters=filters,
+							or_filters=or_filters,
 							fields=["*"],
 						)
 					]