Open Source Linux Command Line Tools - Page 10

ACLbit is a command line tool to backup and restore POSIX ACLs on Linux file systems. The tool uses its backup database to inspect ACLs and provide fast and clear output of effective access rights.

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

Adminlog provides the command line tool "i" which permits administrators to read, write, and share first person notes about their administrative actions on a server.

Linux user-space implementation of Aladdin's eToken R2 device driver

This is a tool that opens the Amarok's mySQL database and exports the Amarok labels as M3U playlists. The tool is command-line based, which is handy for backup purposes.

This Amazon Mechanical Turk (MTurk) SDK is no longer under active development as of TK. The latest MTurk SDKs, with support for most common programming languages, are now a part of the Amazon Web Service (AWS) SDKs at https://aws.amazon.com/tools/. With the AWS SDKs, you can also connect to MTurk using the AWS Command Line Interface (https://aws.amazon.com/cli/), allowing you to perform operations from your Windows, Mac, or Linux command line without having to write code.

AntiDef is written in order to handle with defacement attacks. This tool written in Java in a fast-and-dirty manner; However is works. This tool is working straight forward. Server administrator should run the application with the following specific parameters: path to the copy of the web site (source), path to the application directory, path to log directory and few more optional parameters. This tool compares the source and the destination files, then copies the "defaced" files if any change occurs. The comparison occurs by default every 60 seconds, but can be defined differently. Developer: Nir Valtman Blog: http://valtman-nir.blogspot.com

This is a simple command line tool, which will solve the problem of full mailboxes with stuff you don't want to lose. It fetches all the mail from any POP3 mailbox account and generates a searchable HTML archive on your local harddrive. OS: Unix/Linux

A command line tool that allows a semi-automated scientific articles management. It assumes an existence of a directory of a specific format in the file system. The tool interprets the data stored in the directory (called a repository), extend it via the usage of some automatic tools such as pdftotext, and search the text as well as some metadata.

AudiOrg is a command line tool to sort a collection of audio (or possibly other media) files into a directory structure according to their tag meta data information. It currently supports MP3, AAC and OGG files and reads ID3 and OGG tags.

Aurelia is a modern, front-end JavaScript framework for building browser, mobile, and desktop applications. It focuses on aligning closely with web platform specifications, using convention over configuration, and having minimal framework intrusion. Basically, we want you to just write your code without the framework getting in your way. This library is part of the Aurelia platform. It contains the aurelia-framework library, which brings together all the required core aurelia libraries into a ready-to-go application-building platform. Aurelia applications are built by composing a series of simple components. By convention, components are made up of a vanilla JavaScript or Typescript class, with a corresponding HTML template. Aurelia's standards-based, unobtrusive style makes it the only framework that empowers you to build components using vanilla JavaScript or TypeScript. If you know modern JS and HTML, there's little more to learn to build even the most complex apps.

This library is part of the Aurelia platform and contains its CLI implementation. To keep up to date on Aurelia, please visit and subscribe to the official blog and our email list. We also invite you to follow us on twitter. If you have questions look around our Discourse forums, chat in our community on Gitter or use stack overflow. Documentation can be found in our developer hub. App skeleton is no longer in this repo, it has been moved to a dedicated repo aurelia/v1. Any contribution to the app skeleton should go into aurelia/v1. The au new command now simplifies wraps npx makes aurelia/v1. Users can directly use that makes command to create a new project.

Command line tool written in Java, that automaticly unpacks (password protected) RAR-Archives or multi-part RARs, if all belonging files are complete. It is designed to do unrar jobs on Linux-based NAS-Devices when downloading from Rapidshare & co.

BBSGen is an improved Blum-Blum-Shub pseudorandom number generator. It consists of a C library (libbbsgen) and command-line tool (bbsgen). BBSGen can be used in applications and command-line as secure, unpredictable and strong PRNG.

BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data.

This project was created to allow executing ETL jobs/tasks from a single command line tool with the same syntax, no matter what tool you were executing in. As long as you have a command line client for the ETL tool, you can configure the BIAutomationTool to use it.

A Java-based command-line tool for automatically removing old backups selectively. It can be used when you already make daily backups on disk, and want to clean them up while still keeping some of the ones made weeks, months or years ago.

The Vault Swiss Army knife, which makes enterprise-grade security attainable on Kubernetes. It has many 'blades' that cut through the security problem: the Bank-Vaults operator provides automation; a Go client with automatic token renewal that provides dynamic secret generation, multiple unseal options, and more; a CLI tool to initialize, unseal and configure Vault with authentication methods and secret engines; and direct secret injection into Pods to reduce the attack surface. Automates the entire Vault lifecycle in your Kubernetes clusters. Provides seamless integration with non-Vault-aware applications without storing the decrypted secret anywhere. Vault is the de-facto standard for secret management in cloud-native environments. Bank-Vaults provides various tools for Hashicorp Vault to make its use easier. A wrapper for the official Vault client with automatic token renewal, built in Kubernetes support, and a dynamic database credential provider.

Encode/Decode files to UTF-8 text filled with printable ASCII and Cyrillic characters.

BAC is a command-line tool that converts, to a target audio file format, all the audio files stored in a directory tree of any depth. Supported file formats are OGG, FLAC, MP3, AAC, ALAC, WAV, in all ways, and WMA as source. Main audio tags are preserved in the process, as well as most file name characters (white spaces, question marks etc). BAC runs on Linux and probably most UNIX-type OSes. On Windows, it must be operated from the Cygwin environment. It requires the following software to be installed: - flac and metaflac (flac files only) - vorbis-tools (ogg files only) - faac and faad (aac files only) - lame and madplay (mp3 files only) - alac-decoder and mpeg4ip-utils (ALAC decode) - ffmpeg (ALAC encode, wma decode) - mplayer (wma decode) - mp4v2-utils (AAC, ALAC, WAV decode) BAC is now optimized for multiprocessing on multicore systems: a tunable number of cores can be used for simultaneous conversions.

BatchSSH (or just bssh) is a command line tool for batch execution of commands over SSHv2. BatchSSH is implemented in Java and is therefore platform agnostic. It support's simple but flexible target host definition, SSH gateways and Single-Sign-On.

This proyect provides a GNU/Linux solution for managing the Freecom (www.freecom.com) Beatman Flash MP3 Player and Recorder. This is a user-space C application for uploading, downloading, etc. music files to the player. First you must install the beatman driver (which also includes a command line tool), and next you can optionally install the gbeatman graphical user interface.

"Bio.B-Gen" is a command line tool to generate initial systems for biological molecular simulations. "Bio.B-Gen" was mainly designed to be used with the GROMACS molecular dynamics simulation package (http://www.gromacs.org). "Bio.B-Gen" depends on the GROMACS topology and force field information (.top and .itp data files) during the generation stage. "Bio.B-Gen" adds specified number of copies of a molecule to an existing configuration to a specified spacial domain inside the system, such as a sphere, cube, spherical shell, layer, etc. Then, optionally, "Bio.B-Gen" resolves overlaps between molecules in the system and saves the new molecular configuration. By running "Bio.B-Gen" multiple times for different molecular species and spacial domains quite complex initial systems can be generated. After the system is generated and all the overlaps are resolved an short GROMACS simulation run (10-20 ps) is usually required to ensure proper relaxation of the system.

If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).

Blitz is a generic tool whose purpose is to maintain and execute test cases of arbitrary complexity. Blitz can be used either as a command-line tool or as a full-featured graphical user interface.