Eivind Almaas

About

My interest is in basic research in systems biology, focusing on complex biological networks, epidemiological spread, and cellular metabolism. In my group, we make use of both computational and experimental approaches. We also engage in applied research, specifically to identify alternatives to antibiotics through experimental bacteriophage evolution, and in the computational/ experimental analysis of interactions between yeast and nutrients in beer brewing. More information is available at my research group pages.

Publications

2024

Hall, Martina; Skinderhaug, Marit K.; Almaas, Eivind. (2024) Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study. PLOS ONE
Academic article
Hall, Martina; Skogholt, Anne Heidi; Surakka, Ida; Dalen, Håvard; Almaas, Eivind. (2024) Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study. Frontiers in Cardiovascular Medicine
Academic article
Ghiaci, Payam; Jouhten, Paula; Martyushenko, Nikolay; Roca-Mesa, Helena; Vázquez, Jennifer; Konstantinidis, Dimitrios. (2024) Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes. Molecular Systems Biology
Academic article
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra. (2024) Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980). Molecular Systems Biology
Errata
Almaas, Eivind; Hall, Martina. (2024) Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits. Norges teknisk-naturvitenskapelige universitet Norges teknisk-naturvitenskapelige universitet
Doctoral dissertation

2023

Karlsen, Emil; Gylseth, Marianne Cieslik; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE
Academic article
Pettersen, Jakob Peder; Castillo, Sandra; Jouhten, Paula; Almaas, Eivind. (2023) Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. BMC Bioinformatics
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2023) Parameter inference for enzyme and temperature constrained genome-scale models. Scientific Reports
Academic article
Fiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan Phuc; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. (2023) Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection. Scientific Reports
Academic article

2022

Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE
Academic article
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology
Academic article
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics
Academic article
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE
Academic article
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine
Academic article

2021

Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
Feature article
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok.
Feature article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics
Errata
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports
Academic article
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering
Academic article
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology
Academic article
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases
Academic article
Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology
Academic literature review
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics
Academic article
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases
Errata

2020

Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi.
Feature article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Feature article
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE
Academic article
Gysi, Deisy Morselli; Fragoso, Tiago de Miranda; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE
Academic article
Sulheim, Snorre; Kumelj, Tjasa; Dissel, Dino van; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience
Academic article
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics
Academic article
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE
Academic article

2019

Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling
Academic article
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics
Academic article
Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal
Academic article

2018

Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics
Academic article
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio
Academic article

2017

Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE
Academic article
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology
Academic article
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports
Academic article

2016

Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics
Academic article
Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications
Academic article
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications
Academic article
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology
Academic article
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology
Academic article

2015

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi.
Popular scientific chapter/article
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology
Reader opinion piece
Drejer, Eivind Bøe; Almaas, Eivind. (2015) Modelling and Analysis of Osmotic Stress in Escherichia Coli. Norges teknisk-naturvitenskapelige universitet Norges teknisk-naturvitenskapelige universitet
Masters thesis

2013

Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE
Academic article
Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Academic article
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Academic article

2012

Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology
Academic article
Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Academic chapter/article/Conference paper
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network.
Academic chapter/article/Conference paper
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples.
Academic chapter/article/Conference paper

2010

Almaas, Eivind. (2010) Evolution of metabolic networks.
Academic chapter/article/Conference paper

2009

Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Academic article
Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters
Academic article

Journal publications

Hall, Martina; Skinderhaug, Marit K.; Almaas, Eivind. (2024) Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study. PLOS ONE
Academic article
Hall, Martina; Skogholt, Anne Heidi; Surakka, Ida; Dalen, Håvard; Almaas, Eivind. (2024) Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study. Frontiers in Cardiovascular Medicine
Academic article
Ghiaci, Payam; Jouhten, Paula; Martyushenko, Nikolay; Roca-Mesa, Helena; Vázquez, Jennifer; Konstantinidis, Dimitrios. (2024) Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes. Molecular Systems Biology
Academic article
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra. (2024) Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980). Molecular Systems Biology
Errata
Karlsen, Emil; Gylseth, Marianne Cieslik; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE
Academic article
Pettersen, Jakob Peder; Castillo, Sandra; Jouhten, Paula; Almaas, Eivind. (2023) Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. BMC Bioinformatics
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2023) Parameter inference for enzyme and temperature constrained genome-scale models. Scientific Reports
Academic article
Fiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan Phuc; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. (2023) Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection. Scientific Reports
Academic article
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE
Academic article
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology
Academic article
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences
Academic article
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics
Academic article
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE
Academic article
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine
Academic article
Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
Feature article
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok.
Feature article
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics
Errata
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports
Academic article
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering
Academic article
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology
Academic article
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases
Academic article
Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology
Academic literature review
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics
Academic article
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology
Academic article
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases
Errata
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi.
Feature article
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Feature article
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE
Academic article
Gysi, Deisy Morselli; Fragoso, Tiago de Miranda; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE
Academic article
Sulheim, Snorre; Kumelj, Tjasa; Dissel, Dino van; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience
Academic article
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics
Academic article
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE
Academic article
Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling
Academic article
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics
Academic article
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics
Academic article
Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal
Academic article
Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics
Academic article
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics
Academic article
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio
Academic article
Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE
Academic article
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology
Academic article
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports
Academic article
Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics
Academic article
Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications
Academic article
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications
Academic article
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology
Academic article
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology
Academic article
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology
Reader opinion piece
Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE
Academic article
Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Academic article
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Academic article
Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology
Academic article
Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Academic article
Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters
Academic article

Part of book/report

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi.
Popular scientific chapter/article
Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Academic chapter/article/Conference paper
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network.
Academic chapter/article/Conference paper
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples.
Academic chapter/article/Conference paper
Almaas, Eivind. (2010) Evolution of metabolic networks.
Academic chapter/article/Conference paper

Report

Almaas, Eivind; Hall, Martina. (2024) Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits. Norges teknisk-naturvitenskapelige universitet Norges teknisk-naturvitenskapelige universitet
Doctoral dissertation
Drejer, Eivind Bøe; Almaas, Eivind. (2015) Modelling and Analysis of Osmotic Stress in Escherichia Coli. Norges teknisk-naturvitenskapelige universitet Norges teknisk-naturvitenskapelige universitet
Masters thesis

Teaching

TBT4165 - System Biology and Biological Networks
BT3801 - Tailored Biology: Potential, Limitations and Challenges for Humanity
BT8120 - Prokaryote Molecular Biology and Synthetic Biology
BT8118 - Metabolic Pathway Analysis

Outreach

Vaksinering av voksne er ikke nok

Vaksinering av voksne er ikke nok. Skal vi oppnå flokkimmunitet, er det helt nødvendig å vaksinere barn.

Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger

Store husholdninger gir mer smittespredning og bør prioriteres, særlig der smittetrykket er lavt. Det kan gi flokkimmunitet med færre vaksinedoser enn det dagens strategi vil kreve.

Derfor bør norske myndigheter endre sin teststrategi

Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.

Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi

Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.

Korona - åpning av samfunnet

NRK Kveldsnytt, 7.5.2020, Innslag 1

Kan kloakken gi svar på hvor utbredt koronasmitten er i samfunnet?

NRK Dagsrevyen 21, 4.8.2020 @ 5min15sek

Systematisk spytt-testing for covid-19

NRK Dagsrevyen, 22.02.2021 kl. 19, Innslag 8

Bedre koronatesting med fokus på store husstander

Dagsnytt 18 debatt, 2.11.2020

Ny teststrategi mot korona

NRK Dagsnytt 18 debatt, 22.2.2021, Innslag 3

2023

Lecture

Almaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop , Oslo 06.02.2023 - 10.02.2023
Academic lecture

Fiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. (2023) Phage therapy has little influence on the water microbiota while still preventing infection in Atlantic salmon. 4th International Fish microbiota Workshop , Wageningen 06.09.2023 - 08.09.2023

2022

Poster

Pettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) , Galway 28.09.2022 - 30.09.2022
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference , Galway 28.09.2022 - 30.09.2022
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference , Trondheim 20.10.2022 - 21.10.2022
Poster

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE , Galway 28.09.2022 - 30.09.2022

2021

Academic lecture

Almaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic , Online 03.06.2021 - 04.06.2021
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU , NTNU Trondheim 28.04.2021 - 28.04.2021
Poster

Sulheim, Snorre; Kumelj, Tjasa; Dissel, Dino van; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021 , Virtuellt 01.03.2021 - 02.03.2021

2020

Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting 23.01.2020 - 26.01.2020
Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting 04.03.2020 - 05.03.2020
Academic lecture

Schulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference 03.11.2020 - 03.11.2020
Poster

Hall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci , Online (Rome) 21.09.2020 - 25.09.2020
Academic lecture

Almaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020 , Online video presentation 12.05.2020 - 12.05.2020
Poster

Pettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020 , Online 14.09.2020 - 27.09.2020
Academic lecture

Sulheim, Snorre; A., Fossheim Fredrik; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020 , Trondheim / online 03.11.2020 - 04.11.2020

2019

Poster

Sulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; Dissel, Dino van; Chao, Du; Nieselt, Kay. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019 , Tromsø 05.09.2019 - 06.09.2019
Academic lecture

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture , Dept. of Animal Science, UC Davis 23.09.2019 - 23.09.2019
Academic lecture

Almaas, Eivind. (2019) Genome to phenotypes through computational modeling. Guest Lecture , Dept. of Bioengineering, UC San Diego 11.09.2019 - 11.09.2019
Academic lecture

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture , Lawrence Livermore National Laboratory 24.09.2019 - 24.09.2019
Academic lecture

Almaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture , Boston 15.11.2019 - 15.11.2019
Academic lecture

Simensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference , Oscarsborg Festning 30.09.2019 - 02.10.2019
Poster

Ertesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019 , Tromsø 05.09.2019 - 06.09.2019
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling 24.05.2019 - 28.05.2019
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool 17.05.2019 - 21.05.2019
Academic lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference , Puerto Vallarta 02.06.2019 - 05.06.2019
Academic lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019 , Trondheim 16.06.2019 - 19.09.2019
Lecture

Schulz, Christian; Almaas, Eivind. (2019) Beer'omics - Kveik for Christmas. IBT department Seminar 18.12.2019 - 18.12.2019
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-Scale modelling - No4. Bianual project meeting 30.10.2019 - 30.10.2019
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting 25.10.2019 - 25.10.2019
Academic lecture

Hall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet , Sola 15.06.2019 - 20.06.2019
Lecture

Almaas, Eivind. (2019) How to go on a sabbatical. IBT's weekly Department lunch , IBT's lunch room, NV Faculty, NTNU, Gløshaugen 21.08.2019 -
Lecture

Voigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019 , Røros 25.01.2019 - 25.01.2019
Poster

Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019 , Tromsø 05.09.2019 - 05.09.2019
Poster

Karlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019 24.01.2019 - 27.01.2019
Poster

Zehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 05.09.2019 - 06.09.2019
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting 11.03.2019 - 11.03.2019
Poster

Schulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per. (2019) Measuring Biomass Composition for Modelling. DLN anual conference 05.09.2019 - 06.09.2019
Academic lecture

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019 24.01.2019 - 27.01.2019

2018

Academic lecture

Almaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018 , Tromsø 24.09.2018 - 28.09.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting , Trondheim 13.08.2018 - 13.08.2018
Poster

Schulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology , Sienna 24.07.2018 - 30.07.2018
Poster

Sulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018 , Bergen 20.03.2018 - 21.03.2018
Poster

Sulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science , Paris 11.06.2018 - 15.06.2018
Poster

Schulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018 , Seattle, WA 14.10.2018 - 16.10.2018
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks , Paris 11.06.2018 - 15.06.2018
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference , Hurdal 04.06.2018 - 06.06.2018
Poster

Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018) , Seattle 14.10.2018 - 16.10.2018
Academic lecture

Almaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis , Seattle 14.10.2018 - 16.10.2018
Academic lecture

Almaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology , Trondheim 09.11.2018 - 09.11.2018
Academic lecture

Hall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci , Paris 01.06.2018 - 15.06.2018
Poster

Hall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference , Bergen 20.03.2018 - 21.03.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science 16.05.2018 - 16.05.2018
Lecture

Voigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018 , Drøbak 23.10.2018 - 23.10.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference 03.06.2018 - 06.06.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting 22.06.2018 - 22.06.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting 30.05.2018 - 01.06.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris 11.06.2018 - 15.06.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting 09.03.2018 - 09.03.2018
Academic lecture

Schulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting 16.01.2018 - 17.01.2018
Academic lecture

Voigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018 , Paris 15.06.2018 - 15.06.2018
Academic lecture

Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018 , Voss 17.10.2018 - 19.10.2018
Poster

Karlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018 , Bergen 20.03.2018 - 21.03.2018
Poster

Schulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference 20.03.2018 - 21.03.2018

2017

Academic lecture

Hall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference , Tromsø 08.11.2017 - 10.11.2017
Academic lecture

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications , Bergen 07.09.2017 - 08.09.2017
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) , Blacksburg, Virgina 06.08.2017 - 12.08.2017
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products , Hotel Fiesta Americana Condesa, Cancun 05.03.2017 - 08.03.2017
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology , UiT, Tromsø 08.03.2017 - 10.03.2017
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology , Gøteborg 18.06.2017 - 22.06.2017
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems , Bergen 06.10.2017 -
Academic lecture

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar , Trondheim 20.09.2017 - 20.09.2017
Poster

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology , Gøteborg 18.06.2017 - 22.06.2017
Academic lecture

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) , Blacksburg, Virgina 06.08.2017 - 12.08.2017
Poster

Sulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017 , Hillesøy, Troms 08.11.2017 - 10.11.2017
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference , Hotel Bristol, Oslo 20.03.2017 - 21.03.2017
Lecture

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project , SINTEF, RG Biotechnology 19.09.2017 - 19.09.2017
Poster

Karlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS , Tromsø 08.10.2017 - 10.10.2017
Poster

Schulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference 08.11.2017 - 10.11.2017
Academic lecture

Karlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems , Bergen 06.10.2017 - 06.10.2017

2016

Poster

Heggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016 , Jægtvolden Fjordhotell, Inderøy 25.09.2016 - 28.09.2016

2014

Academic lecture

Almaas, Eivind. (2014) A story of biological networks. Forskningssamarbeid om EØS-Norge midler , Riga 25.02.2014 - 25.02.2014
Programme participation

Almaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia. (2014) Syntetisk biologi. Schrödingers Katt Schrödingers Katt [TV] 27.03.2014
Lecture

Almaas, Eivind. (2014) NTNU iGEM: Syntetisk biologi. Åpen dag 2014 , Trondheim 29.04.2014 - 29.04.2014

2013

Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , Næringsforeningen i Trondheim, Trondheim 27.09.2013 - 27.09.2013
Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , GK Rør AS, Trondheim 21.09.2013 - 21.09.2013
Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , Trondheim Kommune, Trondheim 19.09.2013 - 19.09.2013
Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , Rektors stab, NTNU, Trondheim 26.09.2013 - 26.09.2013
Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , Atelier Ilsvika, Trondheim 20.09.2013 - 20.09.2013
Lecture

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj , KIM senteret, Trondheim 18.09.2013 - 18.09.2013
Interview

Almaas, Eivind. (2013) Hamburger fra laboratoriet. P1 Her og Nå P1 Her og Nå [Radio] 05.08.2013

2012

Lecture

Almaas, Eivind. (2012) Bacterial Anti-Cancer Kamikaze explained. European iGEM Jamboree 2012 , Vrije University, Amsterdam 05.10.2012 - 07.10.2012
Interview

Almaas, Eivind. (2012) Gjør det selv-biologene. A-magasinet A-magasinet [Journal] 25.05.2012

2011

Interview

Almaas, Eivind. (2011) Syntetisk biologi. Teknisk Ukeblad Teknisk Ukeblad [Journal] 29.09.2011

2010

Interview

Almaas, Eivind; Olstad, Lisa. (2010) Hvorfor ble vi mennesker?. [Internet] 10.04.2010
Interview

Almaas, Eivind; Hjorthol, Lars Martin. (2010) Nettverksgener skiller mennesker og sjimpanser. [Internet] 21.02.2010
Interview

Almaas, Eivind. (2010) Sjimpansens gener - og våre. Gemini Gemini [Journal]
Lecture

Almaas, Eivind. (2010) Hva gjør oss smartere?. Foredrag på Universitetet i Stavanger , Stavanger 21.01.2010 - 21.01.2010
Interview

Almaas, Eivind. (2010) SÅ lite skiller oss fra sjimpansene. VG : Verdens gang VG : Verdens gang [Journal]
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology , Trondheim 02.09.2010 - 04.09.2010
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology , Edinburgh 10.10.2010 - 16.10.2010
Programme participation

Almaas, Eivind. (2010) Fanget i nettet. Historien om hvordan alt henger sammen. http://www.nrk.no/p2_akademiet/ http://www.nrk.no/p2_akademiet/ [Radio] 24.04.2010

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Eivind Almaas

Eivind Almaas

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