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A boy grows up behind the safe walls of an apocalyptic Japan full of monsters. Tokyo flourishes as a paradise, while outside the walls of hell dangers lurk. However, a small group searches for heaven.

In the distant future, human beings have been forced to leave earth and migrate to another galaxy. An advanced team of spacecraft arrives at a planet that is to be terraformed. Each member of the team is output by a biological 3D printer.

On an icy mining planet (aka a prison world) mysterious disappearances point to deadly secrets hidden within the mines.

Yun, Goro, and the robot Jet Jaguar clash with the hostile pterosaur-like monster Rodan. Mei travels to Tokyo to meet with a world renowned researcher.

A legion of Rodan swarm towards Nigashio. The Otaki Factory crew scramble to lure them away from the city, but soon find themselves surrounded.

Yun and Haberu deduce that Misakioku may be linked to the Rodan incursion. Mei attends Li's lecture in Dubai, where the professor reveals new material.

Salunga emerges from the depths of the Upala research station shrouded in red dust. Meanwhile, Yun observes Anguirus exhibiting an uncanny ability.

Mei discovers a mysterious code in Professor Ashihara's research. The Otaki crew confront Anguirus as part of the city's extermination efforts.

Following a group of Manda, a giant monster makes landfall in Tokyo. Red dust forces Mei and Professor Li's flight to London to divert to Milan.

Ground forces under the command of Matsubara respond to Godzilla's attack on Tokyo. Now in London, Mei attempts to decipher Ashihara's research.

Godzilla continues to advance on Tokyo, covering the city in red dust. The Otaki crew rushes to rescue a person ensnared by spider-like monster.

Back at Ashihara's mansion, Yun and Haberu attempt to decipher the professor's research using Jet Jaguar. In India, Lina takes Mei to meet with BB.

Before heading to the Super Dimension Calculator, BB offers Mei a view of the Singular Point. The Otaki crew leave for Tokyo to destroy Godzilla.

Mei learns of a large explosion triggered by Ashihara's calculator long ago. Kanoko gives Matsubara the Orthogonal Diagonalizer to use against Godzilla.

Mei, BB and Pelops II attempt to prevent the Catastrophe, but Salunga ambushes them. Meanwhile, the Otaki crew make their final push toward Godzilla.

Nina wakes up on board the spacecraft in her newly printed body. Shortly after greeting other crew members, they are met with a devastating challenge.

While searching for Lewis, the crew uncovers a clue that reveals an unexpected side to him. Patty struggles to come to terms with the team consensus.

Mack returns from the Womb with a clean slate. A seemingly peaceful game of cards goes haywire when Nina suddenly acts out of character.

Nina comes up with an alternative plan to bringing Lewis back. Oscar finds himself in deep trouble when he tries to repair part of the ship.

Hiding away from the others, the misprinted Lewis attempts to proclaim his innocence to his reprinted self.

The two Lewises unlock vital clues that help narrow down the traitor. Meanwhile, Patty and Mack hatch a plan to get the group out of confinement.

While Mack attempts to dismantle the RA bomb, the rest of the crew fight for their lives as the ship quickly disintegrates.

As Patty's true intentions quickly unravel, the crew becomes increasingly divided with everything at stake.

Jim prepares for another day at work as a guard at White Prison. During his commute, he notices that something is off.